Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006964 [exp] 225 / 2e-73 AT5G48540 38 / 0.008 receptor-like protein kinase-related family protein (.1) Lus10025477 [exp] 135 / 7e-39 ND / Lus10025476 [exp] 132 / 1e-38 AT2G31620 44 / 3e-05 Receptor-like protein kinase-related family protein (.1) Lus10006965 [exp] 102 / 4e-28 ND 38 / 7e-04 Lus10001030 [exp] 54 / 5e-09 ND / Lus10001031 [exp] 52 / 2e-08 ND 38 / 8e-04 Lus10003442 [exp] 47 / 1e-06 ND 37 / 0.002 Lus10003443 [exp] 47 / 1e-06 ND / Lus10010416 [exp] 45 / 4e-06 ND 36 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024900 [exp] 42 / 0.0003 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 41 / 0.0003 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.017G040049 [exp] 41 / 0.0003 AT3G22060 221 / 9e-72 Receptor-like protein kinase-related family protein (.1) Potri.017G040215 [exp] 40 / 0.0005 AT3G22060 177 / 8e-56 Receptor-like protein kinase-related family protein (.1) Potri.007G120300 [exp] 40 / 0.0006 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1) Potri.007G120600 [exp] 39 / 0.0009 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal PF07172 [flax] [poplar] GRP Glycine rich protein family
Representative CDS sequence Show only first row Show all	>Lus10025475 pacid=23150879 polypeptide=Lus10025475 locus=Lus10025475.g ID=Lus10025475.BGIv1.0 annot-version=v1.0 ATGGCAAACATTTTGCTGCTGCTTCTGGCATTCGTGGGCAGCATTGTAATTTCCATTAATACCGCTACTGTTATGGAATACCCTGCAGCCGGGTTGTACG TTACTTCACGCAACAATACTGTTCAACCTCAACGAGGTGAGGGCGGCGGACATCACGGAGGCGGTGGGGAAAGCGGCGGTGGAGGCGGCGGTGGGGAAAG TGGTGGTGCAAGTAACGGCGGCCATTTCCACCCTGGTGGTCCAGGCGATGGTTCAGCGGGTGGGGGTGGCAGTTCAGATTCAGACTGGAGGGGGAGGTGC AGCACCGAAGATGAGTTGCTACCTGCGTCAGATGCAGAAGCAGCTCAACGTCAGATACTGAAAGGTCTCGGCGATGCTCGGTTTCTTTCCGGCGACATCG TGGGATGTTACTCTCAGGCTTTCACTTTCGGCAACACCGATCCTGCACTGACAGTGTACAGCACCTTCGGCTGCACCTTGAATCTAGTTGCTGATTGCCA TGCATGTTTCATCGATGCCATCGGACAAATACACAAGTGGTGCCCTCGTAGAGTTGGTGCAATTTTCGCCGACAACTACCACTCGTGTTGTTTGCGATAT GAAACTTACGACTTCTGTGGCACCGCCGATGAATGCAACGTTTAA
AA sequence Show only first row Show all	>Lus10025475 pacid=23150879 polypeptide=Lus10025475 locus=Lus10025475.g ID=Lus10025475.BGIv1.0 annot-version=v1.0 MANILLLLLAFVGSIVISINTATVMEYPAAGLYVTSRNNTVQPQRGEGGGHHGGGGESGGGGGGGESGGASNGGHFHPGGPGDGSAGGGGSSDSDWRGRC STEDELLPASDAEAAQRQILKGLGDARFLSGDIVGCYSQAFTFGNTDPALTVYSTFGCTLNLVADCHACFIDAIGQIHKWCPRRVGAIFADNYHSCCLRY ETYDFCGTADECNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025475 [exp]	0	1

Compare expression of checked genes

Lus10025475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.