Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006964 [exp] 204 / 1e-64 AT5G48540 38 / 0.008 receptor-like protein kinase-related family protein (.1) Lus10025476 [exp] 140 / 5e-41 AT2G31620 44 / 3e-05 Receptor-like protein kinase-related family protein (.1) Lus10025475 [exp] 132 / 6e-38 ND / Lus10006965 [exp] 120 / 2e-34 ND 38 / 7e-04 Lus10001030 [exp] 66 / 3e-13 ND / Lus10010415 [exp] 56 / 1e-09 ND / Lus10009371 [exp] 53 / 6e-09 ND / Lus10009372 [exp] 53 / 2e-08 ND / Lus10019333 [exp] 51 / 8e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10025477 pacid=23150881 polypeptide=Lus10025477 locus=Lus10025477.g ID=Lus10025477.BGIv1.0 annot-version=v1.0 ATGGCGGCCAAAAATTTCTCGAATGCTCTGGCATCACTGCTTCTAGTATTCTTGGTGTCTAGCATTGTAATTTCCAATACCGTTACTGTCATGGCTCGGC CAGCAGGGTTACACGCTACTTCAAGTGACAACACTGTTCAACCTCAACGCGCCGGCAGCCGTGGAGGCGAGGGCGGCCGCGGTGGCGGCAGCGAAAGCCA CAGCCCCGGCCATTTCACCCCAGGCACTGGTAGTCCAGCTGGGCTATACGCTACTTCAAGCAACAATACTGTTCAACCTCAACGAGGCGGCGGACACGGG CACGGCAGCGGGGGCAGTGGTGCGCATGGCAGCAGCGGACACGGGGGCGTTGGGGGCGCCCATTCCAACCCCGGTGGTGGAGGTGGTGGTTCAGGAGGTG GGGGCGGTAGTTCGGGTCATGTAACTTGGCGGGGGAGGTGCAGCAGCGAAAAATCTATGCTACCTAGTGCCGATGCAGGAGACGCTCAACGTCGGATACT GAAAGGTATTGCCATTGCACGGTTTCTTACGGGCAACATTACCGGATGTTACTCTCTGAATTTCAGTCTCGACGGCGGTACTGCACTGCAAGTGTACAGC ACATTCTCGTGCACCTTGGCACCATCTTATCGGTGCTCTGCCTGTTTCGACGCTGCCGCCAAACAGATACAAGATGGGTGTAACGGTAGAGCTGGTGCAA TTTTCTCCGACAACGTGAACTGTTGTTTAAGATATGAACTTTACAATTGCTGTGGCAACATCACTGATGAATGCAATGTTTAA
AA sequence Show only first row Show all	>Lus10025477 pacid=23150881 polypeptide=Lus10025477 locus=Lus10025477.g ID=Lus10025477.BGIv1.0 annot-version=v1.0 MAAKNFSNALASLLLVFLVSSIVISNTVTVMARPAGLHATSSDNTVQPQRAGSRGGEGGRGGGSESHSPGHFTPGTGSPAGLYATSSNNTVQPQRGGGHG HGSGGSGAHGSSGHGGVGGAHSNPGGGGGGSGGGGGSSGHVTWRGRCSSEKSMLPSADAGDAQRRILKGIAIARFLTGNITGCYSLNFSLDGGTALQVYS TFSCTLAPSYRCSACFDAAAKQIQDGCNGRAGAIFSDNVNCCLRYELYNCCGNITDECNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025477 [exp]	0	1
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10040501 [exp]	1.0	0.9996
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033364 [exp]	2.0	0.9960
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	10.7	0.9880
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	12.3	0.9873
					Lus10013255 [exp]	13.8	0.9873
					Lus10013259 [exp]	15.1	0.9873
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	16.2	0.8548
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	16.3	0.9873
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	17.4	0.9873
AT5G09500			Ribosomal protein S19 family p...		Lus10026127 [exp]	17.7	0.7942

Compare expression of checked genes

Lus10025477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.