Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006969 [exp] 189 / 5e-58 AT4G25850 57 / 7e-10 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G167300 [exp] 48 / 1e-06 AT4G25845 78 / 2e-18 unknown protein Potri.018G091900 [exp] 44 / 5e-05 AT4G25845 54 / 2e-09 unknown protein Potri.006G107200 [exp] 41 / 0.0003 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025480 pacid=23150800 polypeptide=Lus10025480 locus=Lus10025480.g ID=Lus10025480.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCAGCAGCAATGGTGAGGAACAAATCGTCGAGAAGAAGAGCGGAGAAGAGAACGATCATCTCACTCTACCAGCTCGACCCATCCTTCTACA ACAAAATCATTTCTCGAAAATCCTCTGTCGGGAACTCGGATTCGCTCCAAACCCACCACCCCCCTGCCATTGCTAACGTCCCTTTCGTCTGGGAGCTCCA CCCGGGCACTCCGAAGCTGAAATCGGCATCCTCGATGCCGATTACAGTTACGAAGTCACCTCCACCGTCGATTCGGATTCCGAAACTGACGAATCTGACC GGGTTCCCGCGTTTCAAATCAAGGAAGCGGATTTATCTGCCGGGGAAGAAGGCGGTGAGGAAATTGGGATCTGAGATTTCGGGGAAGGTGAAGGATGTGT TCTGGAAAAGCGTCGAAGGTGCTCATAAGAAGCTGAAGAGCGCCGGCGGGAGCGTCTCCGGGAGGAAGATCGTCAGGCAGCTGAAGGCTCGGGTCGCGCC GGTGGTGGATCGGCTTGGGAGCTCGCCGCGGGAAGAAGGTGGTAGTGGTGGTTCTTCAGGGGGGCGATTTCGGGATTATTTCTCCAGGGATATGAAATCG TGGTCGAGTGGAGTATCGCCGCCGATTATCTCGGTTTTCCGGCGTGGTTCATCCGGGGTGGCTGTGTTGCCGGCGATTGATGGGCCGACGAGGTTTGCTT GGCGATCGGTGTTGGGGAAGAAGTTGGTGGCGAAGTTGAAATTTGTCAAGGCTGGTAAGACGACGTCGTAG
AA sequence Show only first row Show all	>Lus10025480 pacid=23150800 polypeptide=Lus10025480 locus=Lus10025480.g ID=Lus10025480.BGIv1.0 annot-version=v1.0 MAAAAAMVRNKSSRRRAEKRTIISLYQLDPSFYNKIISRKSSVGNSDSLQTHHPPAIANVPFVWELHPGTPKLKSASSMPITVTKSPPPSIRIPKLTNLT GFPRFKSRKRIYLPGKKAVRKLGSEISGKVKDVFWKSVEGAHKKLKSAGGSVSGRKIVRQLKARVAPVVDRLGSSPREEGGSGGSSGGRFRDYFSRDMKS WSSGVSPPIISVFRRGSSGVAVLPAIDGPTRFAWRSVLGKKLVAKLKFVKAGKTTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025480 [exp]	0	1
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	2.8	0.7405
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	6.3	0.7800
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	12.4	0.7328
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	23.0	0.7179
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	27.3	0.7119
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10016529 [exp]	27.5	0.7208
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	27.9	0.7360
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	28.7	0.7135
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	32.0	0.7094
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	34.6	0.6961

Compare expression of checked genes

Lus10025480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.