Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 236 / 2e-74 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 230 / 2e-72 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 228 / 1e-71 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 200 / 4e-61 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 187 / 5e-56 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 129 / 3e-34 AtPLT4 Major facilitator superfamily protein (.1) AT3G03090 65 / 8e-12 ATVGT1 vacuolar glucose transporter 1 (.1) AT5G17010 64 / 2e-11 Major facilitator superfamily protein (.1.2.3.4) AT1G11260 62 / 6e-11 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19930 62 / 7e-11 ATSTP4, STP4 sugar transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025482 [exp] 416 / 7e-148 AT3G18830 288 / 9e-94 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 368 / 4e-126 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 280 / 2e-91 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 277 / 2e-90 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 259 / 2e-83 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 243 / 4e-77 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 243 / 4e-77 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 237 / 4e-75 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 215 / 8e-67 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152300 [exp] 263 / 3e-85 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 262 / 8e-85 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 250 / 6e-80 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 200 / 5e-61 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 159 / 2e-45 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 139 / 1e-37 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 109 / 4e-27 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.019G055600 [exp] 63 / 3e-11 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.011G042100 [exp] 61 / 2e-10 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.004G233500 [exp] 59 / 7e-10 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10025481 pacid=23150850 polypeptide=Lus10025481 locus=Lus10025481.g ID=Lus10025481.BGIv1.0 annot-version=v1.0 ATGAAAGGCCGGCTCGCGGACGCCAAGCGTGTGCTGCTCAAGATCTCCAATACGGCCCGGGAGGCGCAGGAGAGGCTCGACGACATCAAGGAAGTGGCCG GCATCCCACGAGACATCCAAGACGACCTCGTAGAGGTTCGAAAGAAGACCAAGCATGAAGAAGGAGGAGGAGGGGTGTGGAAAGACCTTCTTGTCCATCC CACCCGGCCCATGCGCCACATTTTGTTGTGCGCCCTCGGGGTTCACTTCTTCCATCAGGCCGTGGGGATCTTCGAGAAGGCCGGGATCACATCCACCCAC AAGAAGCTCCTGGCCACGATCGCCGTCGGAGTGATCAAGACTCTCTTCATCATCGTGCCGATGTTACTCCTCGACAGGATCGGACGGCGGCCGTTGCTTC TGACGAGCTACGCCGGGATGGTGGTCTCGTTAGCGACTCTGGGCGGAACACTTCAAGTGATTAACCGGGACCCGACCCGGAATATCGGGTGGGCGGTTCT GTTGGCGATCTCCGTGGTGTTGTCAGCGGTCGCGTTTTTCTCGATCGGGGCCGGGCCGATTGCTATGGTATACAGTGCGGAAAATTTCCCGTTGAGGTTA AGGGCTCAGGGGATAAGCTTGGGGATGGCGGTGAACCGGGTGGTGAGTGGGGTGATCTCGATGTCGTTTCTGTCTTTGTACAAGGCGATCACTATCGGAG GGGTGTTTTTCATGTTTGCTGGGATCGCAGCCGTTGGATTTGTGTTTTTTCCCTGTTTTACCCTGAGACCCAAGGGAAGACGCTAG
AA sequence Show only first row Show all	>Lus10025481 pacid=23150850 polypeptide=Lus10025481 locus=Lus10025481.g ID=Lus10025481.BGIv1.0 annot-version=v1.0 MKGRLADAKRVLLKISNTAREAQERLDDIKEVAGIPRDIQDDLVEVRKKTKHEEGGGGVWKDLLVHPTRPMRHILLCALGVHFFHQAVGIFEKAGITSTH KKLLATIAVGVIKTLFIIVPMLLLDRIGRRPLLLTSYAGMVVSLATLGGTLQVINRDPTRNIGWAVLLAISVVLSAVAFFSIGAGPIAMVYSAENFPLRL RAQGISLGMAVNRVVSGVISMSFLSLYKAITIGGVFFMFAGIAAVGFVFFPCFTLRPKGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10025481 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10025482 [exp]	1.0	0.9359
					Lus10029497 [exp]	28.1	0.5702
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	205.8	0.5511

Compare expression of checked genes

Lus10025481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.