Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 236 / 1e-73 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 230 / 1e-71 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 227 / 1e-70 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 197 / 2e-59 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 186 / 5e-55 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 148 / 1e-40 AtPLT4 Major facilitator superfamily protein (.1) AT3G05150 72 / 9e-14 Major facilitator superfamily protein (.1) AT3G19930 70 / 5e-13 ATSTP4, STP4 sugar transporter 4 (.1) AT1G11260 69 / 8e-13 ATSTP1, STP1 sugar transporter 1 (.1) AT5G17010 68 / 1e-12 Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025481 [exp] 414 / 4e-147 AT3G18830 287 / 2e-94 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 375 / 6e-128 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 281 / 3e-91 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 279 / 2e-90 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 259 / 9e-83 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 243 / 1e-76 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 243 / 1e-76 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 238 / 1e-74 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 215 / 8e-66 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152300 [exp] 263 / 2e-84 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 262 / 3e-84 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 251 / 2e-79 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 199 / 5e-60 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 159 / 2e-44 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 158 / 2e-44 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 108 / 2e-26 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.017G116400 [exp] 72 / 3e-14 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.004G097800 [exp] 72 / 7e-14 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.007G126800 [exp] 71 / 3e-13 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10025482 pacid=23150893 polypeptide=Lus10025482 locus=Lus10025482.g ID=Lus10025482.BGIv1.0 annot-version=v1.0 ATGGAAGGCCGGCTCGCGGACGCCAAGCGTGTGCTGCTCAAGATCTCCAATACGGCCCGGGAGGCGCAGGAGAGGCTCGACGACATCAAGGAAGTGGCCG GCATCCCACGAGACATCCAAGACGACCTCGTAGAGGTTCGAAAGAAGACCAAGCATGAAGAAGGAGGAGGAGGGGTGTGGAAAGACCTTCTTGTCCATCC CACCCGGCCCATGCGCCACATTTTGTTGTGCGCCCTCGGGGTTCACTTCTTCCATCAGGCCGTGGGGTTCGACACTGTAATTTTTTACAGTCTCAGGATC TTCGAGAAGGCCGGGATCACATCCACCCACAAGAAGCTCCTGGCCACGATCGCCGTCGGAGTGATCAAGACTCTCTTCATCATCGTGCCGATGTTACTCC TCGACAGGATCGGACGGCGGCCGTTGCTTCTGACGAGCTACGCCGGGATGGTGGTCTCGTTAGCGACTCTGGGCGGAACACTTCAAGTGATTAACCGGGA CCCGACCCGGAATATCGGGTGGGCGGTTCTGTTGGCGATCTCCGTGGTGTTGTCAGCGGTCGCGTTTTTCTCGATCGGGGCCGGGCCGATTGCCATGGTG TACAGTGCAGAGATTGCTCGGCACCCGACCCGGTATGTCGGGTGGGCGGTTGTGTTGGCGATCTGCGTGGTGTTGTCAGCGGTCGCGTTTTTCTCGATCG GGGCCGGGCCGATTGCTATGGTATACAGTGCGGAAAATTTCCCGTTGAGGTTAAGGGCTCAGGGGATAAGCTTGGGGATGGCGGTGAACCGGGTGGTGAG TGGGGTGATCTCGATGTCGTTTCTGTCTTTGTACAAGGCGATCACTATCGGAGGGGTGTTTTTCATGTTTGCTGGGATCGCAGCCGTTGGATTTGTGTTT TTTCCCTGTTTTACCCTGAGACCCAAGGGAAGACGCTAG
AA sequence Show only first row Show all	>Lus10025482 pacid=23150893 polypeptide=Lus10025482 locus=Lus10025482.g ID=Lus10025482.BGIv1.0 annot-version=v1.0 MEGRLADAKRVLLKISNTAREAQERLDDIKEVAGIPRDIQDDLVEVRKKTKHEEGGGGVWKDLLVHPTRPMRHILLCALGVHFFHQAVGFDTVIFYSLRI FEKAGITSTHKKLLATIAVGVIKTLFIIVPMLLLDRIGRRPLLLTSYAGMVVSLATLGGTLQVINRDPTRNIGWAVLLAISVVLSAVAFFSIGAGPIAMV YSAEIARHPTRYVGWAVVLAICVVLSAVAFFSIGAGPIAMVYSAENFPLRLRAQGISLGMAVNRVVSGVISMSFLSLYKAITIGGVFFMFAGIAAVGFVF FPCFTLRPKGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10025482 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10025481 [exp]	1.0	0.9359
					Lus10029497 [exp]	37.7	0.5442

Compare expression of checked genes

Lus10025482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.