Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006971 [exp] 81 / 3e-19 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 40 / 0.0001 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 40 / 0.0001 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10034623 [exp] 37 / 0.001 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 37 / 0.0005 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025483 pacid=23150833 polypeptide=Lus10025483 locus=Lus10025483.g ID=Lus10025483.BGIv1.0 annot-version=v1.0 ATGGAGGATGGATCATTTACAGAGACGACACTGAAGAACAAGACTAATGTCGCCGACAACGACAATAAGGAAGCCACGACGAACAAGTTCGCTTTCATCC GTGCAATCATGGCTTCCATGACCTCCGCCTTACTCGGCTACGGTTTTCGTGAACATAGGAGTTCTGCTAGGCTACATCTCCAACTACGGATTCTCAAAGC TCCCACAGAATCTAGGATGGCGGCTCATGCTAGGAGTCGGCGCAATTCCGTCAGTCCTCCTCGCGGTCAACGCCGGAACCCCCACGATGGCTAG
AA sequence Show only first row Show all	>Lus10025483 pacid=23150833 polypeptide=Lus10025483 locus=Lus10025483.g ID=Lus10025483.BGIv1.0 annot-version=v1.0 MEDGSFTETTLKNKTNVADNDNKEATTNKFAFIRAIMASMTSALLGYGFREHRSSARLHLQLRILKAPTESRMAAHARSRRNSVSPPRGQRRNPHDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025483 [exp]	0	1
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038325 [exp]	1.0	0.9801
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	5.7	0.8690
					Lus10022993 [exp]	6.2	0.8937
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	8.5	0.8934
					Lus10002291 [exp]	9.6	0.8915
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	11.7	0.8819
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	12.0	0.8840
					Lus10033900 [exp]	12.7	0.8720
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	17.5	0.8665
					Lus10017800 [exp]	18.3	0.8445

Compare expression of checked genes

Lus10025483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.