Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30210 290 / 2e-93 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 201 / 4e-60 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006972 [exp] 325 / 3e-107 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 316 / 1e-103 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 315 / 2e-103 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10032842 [exp] 213 / 2e-64 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092100 [exp] 256 / 9e-81 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.006G167200 [exp] 256 / 1e-80 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.002G106632 [exp] 211 / 5e-68 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.005G153800 [exp] 206 / 7e-62 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF00258 [flax] [poplar] Flavodoxin_1 Flavodoxin
Representative CDS sequence Show only first row Show all	>Lus10025484 pacid=23150883 polypeptide=Lus10025484 locus=Lus10025484.g ID=Lus10025484.BGIv1.0 annot-version=v1.0 ATGGACTCATCCTCGTCTGCGCCGTCAGGTTCCATGTCGCCGATCGAGATCATGTCGGCGATAATCAGGGGGCAGCTCACGTCGGCCGGCGCGGCGAACG GTTCTTCGACGGAGGCGGTGGCCTCGTTGATCCTTGATAACAGGGAGTTCTTCATGATTCTTACGACTTCAATCGCTGTTCTGATCGGATGTGTGGTGGT TTTGGTGTGGAGAAGGTCCAGCGGACGGAAGGCTAAGAGTTGGGAGCCCCCGACGCCTTTGGTTGTTAAGAAGAAGGAAGAGGAGGTCGACGATGGGAAA ACGAAGGTCACGGTCTTCTTCGGTACTCAGACCGGTACTGCTGAAGGATTCGCCAAGGCTTTGGCTGAGGAAGGGAAAGCGCGGTATGAGAAAGCTGTGT TCAGAGTTGTTGATATGGAAGATTACGCTGGGGATGATGATGAATACGAGGAGAAATTCAAGAAAGAGTCCCTAGCTTTCTTCTTCCTCGCTACGTATGG AGATGGTGAGCCGACTGATAATGCAGCAAGGTTCTACAAGTGGTTTACAGAGGGAAAAGAAGAGAGAGGACAATGGCTAAAGATGAAGTATGGAGTTTTC GGCCTTGGCAACAGACAATATGAACATTTTAACAAGATTGGTAAGGAGATAGATGAGCTTCTGGCTGAGCAAGGTACGGTGTTTCGTCCTCTGAAGTTCC TTTCAAGGTCCCAACGTATCGTTCCTGTGGGTCTTGGAGATGATGATCAATGCATGGAAGATGACTTTACTGCCTGGTGCGAAGCTTAA
AA sequence Show only first row Show all	>Lus10025484 pacid=23150883 polypeptide=Lus10025484 locus=Lus10025484.g ID=Lus10025484.BGIv1.0 annot-version=v1.0 MDSSSSAPSGSMSPIEIMSAIIRGQLTSAGAANGSSTEAVASLILDNREFFMILTTSIAVLIGCVVVLVWRRSSGRKAKSWEPPTPLVVKKKEEEVDDGK TKVTVFFGTQTGTAEGFAKALAEEGKARYEKAVFRVVDMEDYAGDDDEYEEKFKKESLAFFFLATYGDGEPTDNAARFYKWFTEGKEERGQWLKMKYGVF GLGNRQYEHFNKIGKEIDELLAEQGTVFRPLKFLSRSQRIVPVGLGDDDQCMEDDFTAWCEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	0	1
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	4.7	0.7460
AT4G18230			unknown protein		Lus10024587 [exp]	6.0	0.6594
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	11.0	0.6765
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025485 [exp]	12.9	0.7002
AT1G54920			unknown protein		Lus10029936 [exp]	24.1	0.6434
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011860 [exp]	30.2	0.6148
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	31.6	0.6159
AT3G49490			unknown protein		Lus10032925 [exp]	34.4	0.6548
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	36.9	0.6116
AT5G13030			unknown protein		Lus10031800 [exp]	42.5	0.5811

Compare expression of checked genes

Lus10025484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.