Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30210 662 / 0 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 615 / 0 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 226 / 7e-68 Flavodoxin family protein (.1) AT1G30510 76 / 6e-15 ATRFNR2 root FNR 2 (.1.2.3) AT4G05390 76 / 6e-15 ATRFNR1 root FNR 1 (.1.2) AT1G20020 71 / 2e-13 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT5G66190 69 / 4e-13 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT3G24710 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006972 [exp] 820 / 0 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 736 / 0 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 735 / 0 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10032842 [exp] 498 / 2e-172 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10002416 [exp] 410 / 6e-143 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10017589 [exp] 185 / 3e-52 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10038538 [exp] 74 / 4e-14 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10033550 [exp] 66 / 5e-13 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10041904 [exp] 69 / 9e-13 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G167200 [exp] 722 / 0 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.018G092100 [exp] 719 / 0 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 604 / 0 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 439 / 3e-155 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 197 / 1e-56 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.001G371900 [exp] 72 / 2e-13 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G112900 [exp] 68 / 3e-12 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 66 / 1e-11 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.011G027100 [exp] 56 / 1e-09 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00667 [flax] [poplar] FAD_binding_1 FAD binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025485 pacid=23150868 polypeptide=Lus10025485 locus=Lus10025485.g ID=Lus10025485.BGIv1.0 annot-version=v1.0 ATGCAAGGGAGAAATCCAATTGGCCATACCGTTCATGATGCTCAACACCCATGCAGGGCTAATGTCGCTGTAAGGAAAGAGCTTCACACTCCTGTATCGG ACCGATCTTGCACCCATTTGGAATTCGACATTGCCGGCACAGGACTCTCATACGAAACCGGGGACCATGTTGGTGTGTACTGTGAGAATCTCGAGGAGAC CGTAGAAGAGGCCCTGCAGTTATTAGGTTTATCACCCGACACTTACTTCTCTGTCCATGCTGATAAAGAGGACGGCACACCACTTAGTGGAAGTTCCTTA CCAGCGGCATTCCCACCGTGCACACTGAGAACAGCTCTGACCCGTTATGCTGATCTTTTGAATTCCCCCAAAAAGTCTGCTCTGCTAGCTTTAGCAGCTC ATGCTACTGATCCGACAGAAGCCGATCGATTGAGGCATCTAGCGTCTCCTGCTGGCAAGGATGAATATTCAAAATGGATAGTTGCAGAGCATAGAAGTCT CCTTGAGGTCATGACTACGTTCCCCTCCGCTAAGCCCCCACTCGGTGTATTCTTTGCTGCAGTTGCTCCTCGCTTACAGCCCAGATTCTATTCCATCTCT TCCTCTCCAAGGATGGCACCATCTCGAATTCATGTCACTTGTGCTCTAGTGCTTGAGAAAACACCAGGAGGCCGAACTCACAAGGGGGTGTGCTCGACGT GGATGAAGAATGCTGTTCCTATGGAGAAGAGCCAGGAGGACTGCAGCTGGGCGCCAATTTTCGTTCGGCAATCGAATTTCAGGCTTCCTGTAGACACGAA AGTTCCCATCATAATGATCGGTCCCGGCACTGGGCTGGCTCCTTTCAGGGGCTTCCTTCAGGAAAGATTAGCTCTCAAAGAGGCTGGATCAGAACTCGGA ACCTCCCTTTTCTTCTTTGGTTGCAGAAACCGTAAGACGGATTTTATCTACGAGGACGAACTCAACAACTTTGTCGAAACCGGTGCGCTCTCTGAGCTGA TTGTTGCCTTCTCTAGGGAAGGACCTACCAAAGAGTACGTCCAGCATAAAATGATGCAGAAGGCTTCGGAGATATGGAACTTGATCTCGGAGGGAGCGTA CGTGTACGTATGTGGCGATGCTAAAGGCATGGCCAAAGACGTCCACCGAACTCTCCACACCATCGCCATCGAACAGGGCTCGCTCGAGACCTCCAAGGCC GAAGGCTTGGTAAAGAATCTGCAAACGAGCGGCCGGTATCTACGTGACGTCTGGTGA
AA sequence Show only first row Show all	>Lus10025485 pacid=23150868 polypeptide=Lus10025485 locus=Lus10025485.g ID=Lus10025485.BGIv1.0 annot-version=v1.0 MQGRNPIGHTVHDAQHPCRANVAVRKELHTPVSDRSCTHLEFDIAGTGLSYETGDHVGVYCENLEETVEEALQLLGLSPDTYFSVHADKEDGTPLSGSSL PAAFPPCTLRTALTRYADLLNSPKKSALLALAAHATDPTEADRLRHLASPAGKDEYSKWIVAEHRSLLEVMTTFPSAKPPLGVFFAAVAPRLQPRFYSIS SSPRMAPSRIHVTCALVLEKTPGGRTHKGVCSTWMKNAVPMEKSQEDCSWAPIFVRQSNFRLPVDTKVPIIMIGPGTGLAPFRGFLQERLALKEAGSELG TSLFFFGCRNRKTDFIYEDELNNFVETGALSELIVAFSREGPTKEYVQHKMMQKASEIWNLISEGAYVYVCGDAKGMAKDVHRTLHTIAIEQGSLETSKA EGLVKNLQTSGRYLRDVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025485 [exp]	0	1
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10006972 [exp]	3.3	0.8100
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	12.9	0.7002
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011260 [exp]	17.3	0.7683
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	24.7	0.7104
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	32.2	0.7757
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10035082 [exp]	37.1	0.6900
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	37.4	0.7618
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	43.5	0.7662
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	45.9	0.6892
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	62.7	0.7509

Compare expression of checked genes

Lus10025485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.