Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43240 679 / 0 Nucleotide-sugar transporter family protein (.1.2) AT3G59360 677 / 0 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2) AT5G41760 149 / 2e-41 Nucleotide-sugar transporter family protein (.1.2) AT4G35335 135 / 3e-36 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027009 [exp] 786 / 0 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10037204 [exp] 162 / 3e-46 AT5G41760 542 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10036726 [exp] 158 / 3e-44 AT5G41760 516 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026562 [exp] 134 / 2e-35 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013845 [exp] 113 / 1e-27 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G035800 [exp] 683 / 0 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.008G077300 [exp] 667 / 0 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 656 / 0 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.001G094600 [exp] 137 / 7e-37 AT5G41760 525 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 137 / 1e-36 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G136800 [exp] 135 / 2e-36 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10025486 pacid=23145087 polypeptide=Lus10025486 locus=Lus10025486.g ID=Lus10025486.BGIv1.0 annot-version=v1.0 ATGAAAAACGCTGTGATAGAATGCAGCGTTTGCCGTTCCAAACTGCTGTCCCCAGCTTCCAAAACTGTTTCCAGGGCTTATGACAGGCACAAGAGCAGGG TATCATCCAAGCAGCGCGCCCTCAATGTTTTGTTAGTTGTTGGTGATTGTATGTTAGTTGGCTTATCGCCTATACTGGTTTACATGTCCAAGGTGGATGG GAAATTTGAGTTCAGTCCAGTAAGTGTCAACTTCTTGACAGAAATTGCAAAGGTCGCATTTGCAATTGTTATGCTTATTTTACAGGCTAGACGTCAAAAA GTTGGAGAAAAGCCACTTCTATCATTATCTTCACTTACACAGGCAGCTCGTAACAACGTCCTTCTTGCAGTTCCTGCTTTTCTATATGCTATCAATAATT ATCTGAAGTTCACCATGCAGCTTTATTTTAATCCTGCAACCGTGAAGATGCTGAGCAATCTAAAGGTTCTGGTTATTGCTGTTCTGCTGAAGTTTGTAAT GAAGCGGCGTTTTTCTATAATTCAGTGGGAAGCCCTTGCTTTACTGCTCATTGGAATTAGCATAAATCAGTTACGGTCTTTACCTGAAGGTGCTACTGCA ATGGGCCTTCCAGTTGCAACGGGAGCTTACATGTACACTTTCATCTTCGTTACAGTCCCATCTCTGGCCTCCGTCTTTAATGAGTATGCCCTGAAGAGCC AATATGACACCAGTATATACCTTCAGAATCTGTTTTTGTATGGCTATGGTGCGATATTCAATTTTCTGGCGATTTTGGCAATTTCTGTCGTCAAAGGTCC TAGTAGCATGGACATCCTTCACGGTCATTCAAAAGCTACAATGCTTCTAATATGTAACAATGCAGCCCAAGGAATTTTGTCGTCCTTTTTCTTTAAATAT GCAGACACTATCCTGAAGAAGTACTCATCAACGGTGGCCACCATCTTCACAGGCATTGCATCTGCTGCAATGTTTGGTCACAAGTTGACCATGAACTTTG TGTTGGGAATCTCTATTGTGTTCATTTCAATGCACCAGTTTTTCTCGCCTCTTTCGAAACCCAAAGATGAGCCAGAAAATGTGGTTGTGGAACTCAAGGA CGTTGAGGACAATCGCAGGTCAAAAGAGTCGTTCATAAACATGGCAGCCGGAGCAAATGAAGGGGCGAGTCATCGGGTAGGACATGATGAAAGGCAGCCT CTGCTTCCAACCTAA
AA sequence Show only first row Show all	>Lus10025486 pacid=23145087 polypeptide=Lus10025486 locus=Lus10025486.g ID=Lus10025486.BGIv1.0 annot-version=v1.0 MKNAVIECSVCRSKLLSPASKTVSRAYDRHKSRVSSKQRALNVLLVVGDCMLVGLSPILVYMSKVDGKFEFSPVSVNFLTEIAKVAFAIVMLILQARRQK VGEKPLLSLSSLTQAARNNVLLAVPAFLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKFVMKRRFSIIQWEALALLLIGISINQLRSLPEGATA MGLPVATGAYMYTFIFVTVPSLASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLAILAISVVKGPSSMDILHGHSKATMLLICNNAAQGILSSFFFKY ADTILKKYSSTVATIFTGIASAAMFGHKLTMNFVLGISIVFISMHQFFSPLSKPKDEPENVVVELKDVEDNRRSKESFINMAAGANEGASHRVGHDERQP LLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	0	1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	3.0	0.9077
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	3.2	0.8636
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	3.5	0.8405
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10018010 [exp]	9.4	0.8129
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	11.3	0.8191
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	11.5	0.7696
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	12.2	0.8134
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	13.0	0.7727
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	13.0	0.7899
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	13.8	0.8299

Compare expression of checked genes

Lus10025486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.