Plant FIBer expression Database

Lus10025487 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43235 248 / 8e-78 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027009
[exp]
577 / 0 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G124600
[exp]
324 / 4e-107 AT2G43235 348 / 9e-117 unknown protein
PFAM info
Representative CDS sequence
>Lus10025487 pacid=23145016 polypeptide=Lus10025487 locus=Lus10025487.g ID=Lus10025487.BGIv1.0 annot-version=v1.0
ATGAATTCCACCACCACCCTCCGCTTCTCTCCTCTTCTTCATCCTCGCTTCCTTACCAAATCTCCGAATATCCTTCCTCCTTCCAGATTCTTCTCCTCCT
CAATCCGATGCTCTTTCTCCACTAGGCGCCGCCGCGGCACTCGCCGGTCCGGCAGGAGGAAACTACTCCAAACCACAACCTCCACCCGTCCTTCCTTCAT
CCACGACGACGAAGACCTCGATCACTCTACCGCAACTCAGAGCCTTCAATTGGTCCTCGATCTCGCCCAGCTCTCCTCACTCGCCTCTTCCAACCTCCGT
CAGTTTATCTCCGCCGGCAAGGACGCGTATCGCGATCTTAGAACCCTAATCTCCTACGATGAGAACAACAGGATCGTCTTCTCGTGCCGTAAGTCGACTG
TGCGGTTCACCGGCATGTTTTTGCTCTGTGGATTTGTGTTGGTTACGGCGGTTAGGGTTTTGGGAGGTGGTAGTGGCGACGGCCACAGCGGCGGACAGAG
ATGGTGTAGGGGAGATGGTGTAGCGATGCCGAAGAGGAAGAGGTTTGGGGTTTTGGATAATCCTTTGTCGTCTCTGAGTCTTGCTATGGAGGGAAATGAT
TGGGGGAAGTATCTAGGTCGGAGGCAAGACAAGCTGCCCAAATGGTGGCCGGTGACGGTGGAAGGCCATGTGTCCATTGACAATCAAGAGGAGCATCAAA
GGGAAGCCAAGAGATTGATTCGAGAAATCACGGATTATAGAACAAGGGGAAAGGATTTTGCAGTGGATGACATAATTCAAGTCAGTACCTTTCTCTATTC
TCTTCTTGCTAAGACATCTGGAGTGAAGGTTAGCTTTGACACCACACACACTCGTGACGCATTATTTCGTGCACTAATTGACTTTGTTTTAAACATGTGT
AGTAGTAATCCAAGTTACAACAGGATACTTGAGATTGATGGTGAAGGTGTTCAGGAATTCATTGCTGGGCTTGCTGAAAATATTGGGCTTGAGAATGTTC
GCGCCGCACGAATTGTATCTGCAGCTGTTGCTGCACGTACTCATTCATGTTTTTTGCAGGCTTGGGCTTTCAATGTGCAAGGAAAACACTCGGAAGCAGA
GTTGGAACTGTCAAGCATATGTTCTGTTCTTCAGACCTTTCCACCTGACGAGTCTTCGGCGGAAATGGAGATGGTAGCAGAGGGACTGGGAAAGCATTTG
AAGATGGAGCAGAGGGAAGTTCTAATGAACATGTTGCTAGCCGCTTGCAGCAGTAAAGAGTGCCATAGAATGGCAGCAGATGCCCTTGGCTTGAAGCTGC
CGTCTGAAGATAGCAGCAGCAGAAGTCCAGTTGAAAGCTAA
AA sequence
>Lus10025487 pacid=23145016 polypeptide=Lus10025487 locus=Lus10025487.g ID=Lus10025487.BGIv1.0 annot-version=v1.0
MNSTTTLRFSPLLHPRFLTKSPNILPPSRFFSSSIRCSFSTRRRRGTRRSGRRKLLQTTTSTRPSFIHDDEDLDHSTATQSLQLVLDLAQLSSLASSNLR
QFISAGKDAYRDLRTLISYDENNRIVFSCRKSTVRFTGMFLLCGFVLVTAVRVLGGGSGDGHSGGQRWCRGDGVAMPKRKRFGVLDNPLSSLSLAMEGND
WGKYLGRRQDKLPKWWPVTVEGHVSIDNQEEHQREAKRLIREITDYRTRGKDFAVDDIIQVSTFLYSLLAKTSGVKVSFDTTHTRDALFRALIDFVLNMC
SSNPSYNRILEIDGEGVQEFIAGLAENIGLENVRAARIVSAAVAARTHSCFLQAWAFNVQGKHSEAELELSSICSVLQTFPPDESSAEMEMVAEGLGKHL
KMEQREVLMNMLLAACSSKECHRMAADALGLKLPSEDSSSRSPVES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43235 unknown protein Lus10025487
[exp]
0 1
AT2G36895 unknown protein Lus10001393
[exp]
3.9 0.7185
AT4G08500 ARAKIN, ATMEKK1... MAPK/ERK kinase kinase 1 (.1) Lus10028038
[exp]
5.7 0.6730
AT2G37880 Protein of unknown function, D... Lus10022595
[exp]
14.1 0.6678
AT2G20440 Ypt/Rab-GAP domain of gyp1p su... Lus10043064
[exp]
19.7 0.6639
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Lus10033896
[exp]
21.5 0.6092
AT5G17400 ER-ANT1 endoplasmic reticulum-adenine ... Lus10017874
[exp]
31.0 0.6071
AT3G03380 DEG7, DEGP7 degradation of periplasmic pro... Lus10042507
[exp]
32.5 0.5827
AT1G31800 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrom... Lus10020380
[exp]
43.3 0.6070
AT5G47860 Protein of unknown function (D... Lus10009920
[exp]
57.6 0.6006
AT2G04880 WRKY ATWRKY1, ZAP1 zinc-dependent activator prote... Lus10006368
[exp]
58.3 0.5625

Lus10025487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.