Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 106 / 9e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22830 100 / 1e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G16860 79 / 3e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 79 / 4e-17 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 79 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 77 / 9e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 77 / 9e-17 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 77 / 1e-16 unknown protein AT2G33760 76 / 3e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G20730 75 / 5e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009487 [exp] 209 / 2e-63 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016511 [exp] 80 / 2e-17 AT5G59600 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011323 [exp] 77 / 1e-16 AT5G52630 790 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10039703 [exp] 77 / 2e-16 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012206 [exp] 76 / 4e-16 AT5G52630 786 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10013319 [exp] 76 / 4e-16 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027389 [exp] 76 / 5e-16 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 76 / 5e-16 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 76 / 6e-16 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 140 / 9e-39 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G014900 [exp] 87 / 6e-20 AT5G59600 334 / 6e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 82 / 4e-18 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 79 / 4e-17 AT3G22690 1050 / 0.0 unknown protein Potri.017G086100 [exp] 78 / 6e-17 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 77 / 2e-16 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 77 / 2e-16 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G243800 [exp] 76 / 2e-16 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 76 / 3e-16 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 76 / 4e-16 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025488 pacid=23145120 polypeptide=Lus10025488 locus=Lus10025488.g ID=Lus10025488.BGIv1.0 annot-version=v1.0 ATGATCTCACAAGCCAAGGGAATCTGTGCAAGGCATTCAAAACATTTTCGTTATTGCAACGACATGCTCTCACATCATGACTCACACGTGGATTCAATTG CGTGTCTTTTGTTTGCTTGTGCTGCTCGGAAATCGACTTGGCAAGGAAGAAGACAGCTCCACAGAGCATATGATCTCGTTAGGAATGAGCTGTGTGGGGA GGCTCTTTCTGCTTATACGGAGATGAGGAGTAAAGGAGGAGTTCACAGCTCCATTAGAGCTAGCAATCATCGCTGGAATTTGTTTGTGCATAATGCATTA ATATCAATGTACAGTAAAACCGGGGAGCTAGAAGTTGCACGGTGTTTGTTTGACGAGATGCCGGCTAGGGATGTTGTGTCTTGGAATTCAATTATTGGTG GTTATGCTTCAAAGGGAATATGGAAGGAAGCCATTGAGCTGTTCGAAAGAATGCAGTCAGAAGTTGGTAAGAATATAAACAACATAACGTGGAATACTTT TGCTAAATGCTGTTCGCGTTCTGGAAATTTCTTAGGTGTCCTGGACTTGCTCTCTAAATGA
AA sequence Show only first row Show all	>Lus10025488 pacid=23145120 polypeptide=Lus10025488 locus=Lus10025488.g ID=Lus10025488.BGIv1.0 annot-version=v1.0 MISQAKGICARHSKHFRYCNDMLSHHDSHVDSIACLLFACAARKSTWQGRRQLHRAYDLVRNELCGEALSAYTEMRSKGGVHSSIRASNHRWNLFVHNAL ISMYSKTGELEVARCLFDEMPARDVVSWNSIIGGYASKGIWKEAIELFERMQSEVGKNINNITWNTFAKCCSRSGNFLGVLDLLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10025488 [exp]	0	1
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	12.0	0.8191
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10007311 [exp]	16.0	0.8137
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	18.0	0.8134
AT5G46560			unknown protein		Lus10011046 [exp]	21.8	0.7986
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	26.2	0.8127
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	29.9	0.8056
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	38.6	0.8030
AT2G43190			ribonuclease P family protein ...		Lus10019913 [exp]	50.6	0.7739
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	51.1	0.7811
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	51.5	0.7941

Compare expression of checked genes

Lus10025488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.