Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33760 704 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 457 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G66520 446 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 442 / 8e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 441 / 8e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 445 / 3e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 441 / 3e-147 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 426 / 5e-142 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 422 / 1e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 422 / 5e-139 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 463 / 2e-156 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 430 / 3e-143 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 426 / 1e-141 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 431 / 6e-141 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10010909 [exp] 425 / 7e-141 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 429 / 2e-140 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10040504 [exp] 421 / 8e-140 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010385 [exp] 419 / 3e-139 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 423 / 4e-138 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052300 [exp] 810 / 0 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G043400 [exp] 781 / 0 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 471 / 9e-160 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 460 / 2e-155 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 451 / 8e-152 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 442 / 4e-148 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 439 / 8e-147 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G040100 [exp] 441 / 2e-146 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 435 / 2e-145 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 437 / 7e-145 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025490 pacid=23145062 polypeptide=Lus10025490 locus=Lus10025490.g ID=Lus10025490.BGIv1.0 annot-version=v1.0 ATGTTGCGGCGGCGTATCGCTTCTCTCTCTGCGTCATCTCCTTCCTCCATCAGACGTTACCTCCCCTTCCGTCTCCCTGAGCAAGGTTTAGTATCAGTCA ACGAAAACCACCAGGAAGACCAATCATTCCAACAACATTCTCCACACTACAGCTTTCTACTCCTAGCAGGGGATAATCTCAGACTCCTGCACCAAGCTCA CGCCTACATTATTGCATCAGGCTCCGGTCACAGTCGATCTCTCCTCACCAAGCTTCTCACTTTAGTTTTCCCTACTGCCTCCATTGAATACACTCACAGG ATATTTCTTTCCATCCCTAACCCTGACTCTTTCCTTTTCAATACCCTCATTAGATCAACCTCCAAGTTCTCGCATTTCTCTGTACATTCCTTGTATTACT ATTCTCGTATGCTCCTCCACGGCATTCCGCCCTCCAATTACACTTTCACTTCCGTTATCAAATCATGCACGAGCTTATCGGGATCGAATAACGGTAGAAT TGTTCACGGGCATGTTTTGGTTCATGGGTATGGGATTGATGAGTATGTGCAATCTGCATTGGTGGCTTTCTATTGCAAAATTGGCAAATTGAGTGATGCA GCTAAGGTGTTTGAGAAAATGCCTGAAAGAGGAGTTGTGGCTTGGAATTCTTTGATCTCTGGGTATGAGCAACACGGCCTTGCAAAGGAGGCGATTGAAT TGTTTGGCAAAATGAGGGATGCCGGTATCGCGCCGGATACAACTACTTGTGTGGTAGTTTTGGCAGCGTGTGCTCAGGTAGGTGAACTCGGACTCGGTCA TTGGGTTCATGACTATGTCGATACAAATTCTTTCGATATGACTGTGGTACTCGGCACTTCGTTCATCAATATGTATTCGAGATGTGGGGATGTGAAGAAG GCAAGGGAAGTTTTCGATTCAATGAGCAGAAAAAACGTCTTTTCATGGACAGCAATGATTTCTGGTTATGGAGTCAACGGCTATGGTCGTGAATCGCTCG AGTTATTTCGTCGGATGAAGGTGAGTGGAGTTTCTCCCAACAATGTTACCTTTGTTGCTGTTTTATCTGGATGTGCTCATGCCGGGCTGGTCGAAGAGGG ACGTGAGTTATTTGCCAGCATGAAAGAAGATCACTTTTTAATTCCAGGAGTGGAGCATTATGTTTGCATGGTTGATTTGTTCGGACGTGCTGGAAATCTT AGAGAAGCGTATAAATTTATTCAGGAATCAGTTCCTTCACCCCCTGCTCCTGCTATATGGACCGCAATGCTCGGGGCTTGTAAGCTGCATAAGGATTTCG ATCTCGGAGCAGAAGTCGCGAAGCATCTCTTAGCCATTGAGCCAGAAAATCCCGGTCACTATGTGATGCTTTCGAATATATACGCTTCAGCGGGGAGAAT GGACCGGGTGGAGGTAATTAGGGATAAGATGATTCGGAAATCATTGAGTAAGCAAGTCGGGTATAGCATCATAGAGATTGATGGCAAGAGTTATTTGTTT AGCATGGGGGACAAATCCCATCCAGAGGCAAATGAGATATTCCGGTATTTGGATGAATTGATGGGGAGATGTGCTGAAGCTGGTTATGTACCTGCGCCAG AGTCGGTGATGCATGAACTTGAAGAGGAGGAGAGGGCATATGCACTTAGGTATCACAGCGAGAAGCTTGCGATTGCTTTTGGTTTGATGAAGACGAGCTC TGGATCTACCATCAGGGTAGTTAAGAACATTAGAATGTGTGAAGACTGTCATTTGGCGATCAAGTACATCTCGAATGTTACTAAGAGAGAAATTGTTGTT CGTGACAAGCTCCGTTTCCATCACTTTAAGGATGGCTCCTGCTCTTGTATGGACTATTGGTGA
AA sequence Show only first row Show all	>Lus10025490 pacid=23145062 polypeptide=Lus10025490 locus=Lus10025490.g ID=Lus10025490.BGIv1.0 annot-version=v1.0 MLRRRIASLSASSPSSIRRYLPFRLPEQGLVSVNENHQEDQSFQQHSPHYSFLLLAGDNLRLLHQAHAYIIASGSGHSRSLLTKLLTLVFPTASIEYTHR IFLSIPNPDSFLFNTLIRSTSKFSHFSVHSLYYYSRMLLHGIPPSNYTFTSVIKSCTSLSGSNNGRIVHGHVLVHGYGIDEYVQSALVAFYCKIGKLSDA AKVFEKMPERGVVAWNSLISGYEQHGLAKEAIELFGKMRDAGIAPDTTTCVVVLAACAQVGELGLGHWVHDYVDTNSFDMTVVLGTSFINMYSRCGDVKK AREVFDSMSRKNVFSWTAMISGYGVNGYGRESLELFRRMKVSGVSPNNVTFVAVLSGCAHAGLVEEGRELFASMKEDHFLIPGVEHYVCMVDLFGRAGNL REAYKFIQESVPSPPAPAIWTAMLGACKLHKDFDLGAEVAKHLLAIEPENPGHYVMLSNIYASAGRMDRVEVIRDKMIRKSLSKQVGYSIIEIDGKSYLF SMGDKSHPEANEIFRYLDELMGRCAEAGYVPAPESVMHELEEEERAYALRYHSEKLAIAFGLMKTSSGSTIRVVKNIRMCEDCHLAIKYISNVTKREIVV RDKLRFHHFKDGSCSCMDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	0	1
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	1.0	0.8123
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	8.8	0.6717
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10039915 [exp]	8.8	0.6909
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	9.8	0.6787
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	12.0	0.6673
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	18.5	0.6539
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	20.1	0.6517
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10040577 [exp]	24.7	0.6789
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	30.8	0.6397
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	35.5	0.6468

Compare expression of checked genes

Lus10025490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.