Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 80 / 2e-16 RING/U-box superfamily protein (.1) AT2G25410 67 / 4e-12 RING/U-box superfamily protein (.1) AT2G46495 66 / 6e-12 RING/U-box superfamily protein (.1) AT1G70250 63 / 2e-10 receptor serine/threonine kinase, putative (.1) AT5G38280 62 / 2e-10 PR5K PR5-like receptor kinase (.1) AT1G67000 61 / 7e-10 Protein kinase superfamily protein (.1) AT2G46494 59 / 2e-09 RING/U-box superfamily protein (.1) AT4G18250 59 / 2e-09 receptor serine/threonine kinase, putative (.1) AT1G66980 59 / 3e-09 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38260 59 / 4e-09 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025553 [exp] 390 / 2e-131 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025547 [exp] 158 / 4e-43 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10014923 [exp] 101 / 4e-23 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10026761 [exp] 94 / 1e-20 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10027012 [exp] 66 / 2e-12 ND / Lus10027011 [exp] 61 / 9e-12 ND / Lus10025545 [exp] 66 / 1e-11 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10012628 [exp] 66 / 2e-11 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10025555 [exp] 59 / 4e-11 AT1G70250 84 / 2e-20 receptor serine/threonine kinase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018000 [exp] 110 / 2e-26 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 104 / 2e-24 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.017G035500 [exp] 103 / 4e-24 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.007G126200 [exp] 102 / 9e-24 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 102 / 2e-23 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.012G003400 [exp] 98 / 3e-22 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2) Potri.007G125900 [exp] 96 / 1e-21 AT1G66920 0 / 1 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 96 / 1e-21 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 96 / 2e-21 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G003450 [exp] 89 / 3e-21 AT1G70250 98 / 6e-25 receptor serine/threonine kinase, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025491 pacid=23145117 polypeptide=Lus10025491 locus=Lus10025491.g ID=Lus10025491.BGIv1.0 annot-version=v1.0 ATGATGAATTCCCCTTTGACTATTCTGTGCTGCTTGATTTTCCTACTTGCAGAGTCAGCAGAAAGCTTCAATCTTTCCTGCAGTAAAGCACCAAACTGTG TTATAGGAACTAACAGCATCATCAAGTTCCCTTTCACAATCAAAGGAAAACCATCTGGGTACGATGGATTTCCAGGGTTCGAGCTTTCTTGCAACACAAG CAACCAGACAATTCTCCACCTACCAAATTCTGTCAACTTCACCCTCCTCAGGATTGACTACGAAGCTCAGATGTTCTACGTTAAGAGCCCAAATGACTGC CTCCCCAGACAGCTCGGGGAACTCCTGCCGACGATAAAAGATTCATCGTCACGATTCAAGATGGCAGGGATGTCGCTATCAACTTCCAGTTTCTTCGACT GTCCAAAGCTGGCTCATATCACTGAATGGGCGACGTCAGTGACTTTCCTTGGAAGTAGGGTTTATGTGTATCCTTCTGAGGCTCCATTGAATGATGTCAA CTTGGTGCCTTGTACCAAGATGTTTGACAGCGGATCCTATGATCAGGAGGATCACAGTCTTCAGTTGAGCTGGTCCGAACCGGATTGTGGTAGATGTTAC AGGAAAAGGGGCCACTGTTATGTGCTGAGAAAGGGCAGCGCTGCTGAACCCCAGGCTGAATGTTCTTCTGGTGTTACTACTGATGATGAGAGAAAGGTTT ATCCTTTGAAAAAAGCACTGATAGCAGGAGTGGTTCTGGGTTCACTTCTCATTGCGGCATCAATCTATGCACTTTCCCGCACATACAGATTCGATAGAAA GGAAAAGGGCGGAGTAGCTGGCGAGATCGTTAAGAAGCTTGCGGTAGTTGGGCTGTGGTGCATTCAATGGAATCCAGTTGATCGACCTCCGATGAAACTT ATTGTGCAAATGCTGGAAGGGCATGGTGGCAATTTAACAGCACCTCCTAATCCTGTTAGCTCTAATGGTGGTGCAGCAAGAAGGGCAGCCATGGCGAAGT CAATGCAGCTGCAAGAGTTGGAAATCATACCGGAAACAGAAGAACATCAAAGTTCGAGTAGGATGATACCAGAAGAACATCAAAAGTTGTCGTCCTCAAG ATTATAA
AA sequence Show only first row Show all	>Lus10025491 pacid=23145117 polypeptide=Lus10025491 locus=Lus10025491.g ID=Lus10025491.BGIv1.0 annot-version=v1.0 MMNSPLTILCCLIFLLAESAESFNLSCSKAPNCVIGTNSIIKFPFTIKGKPSGYDGFPGFELSCNTSNQTILHLPNSVNFTLLRIDYEAQMFYVKSPNDC LPRQLGELLPTIKDSSSRFKMAGMSLSTSSFFDCPKLAHITEWATSVTFLGSRVYVYPSEAPLNDVNLVPCTKMFDSGSYDQEDHSLQLSWSEPDCGRCY RKRGHCYVLRKGSAAEPQAECSSGVTTDDERKVYPLKKALIAGVVLGSLLIAASIYALSRTYRFDRKEKGGVAGEIVKKLAVVGLWCIQWNPVDRPPMKL IVQMLEGHGGNLTAPPNPVSSNGGAARRAAMAKSMQLQELEIIPETEEHQSSSRMIPEEHQKLSSSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	0	1
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	1.4	0.8932
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	2.8	0.8811
					Lus10009774 [exp]	3.7	0.8466
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10040106 [exp]	4.2	0.8308
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	5.9	0.8570
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	6.3	0.8445
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	6.5	0.7466
					Lus10014515 [exp]	6.5	0.8711
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	7.7	0.8545
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	8.2	0.8638

Compare expression of checked genes

Lus10025491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.