Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 321 / 9e-101 Protein kinase superfamily protein (.1) AT5G38280 315 / 4e-98 PR5K PR5-like receptor kinase (.1) AT1G67000 317 / 9e-97 Protein kinase superfamily protein (.1) AT1G66930 309 / 1e-95 Protein kinase superfamily protein (.1) AT1G70250 311 / 2e-95 receptor serine/threonine kinase, putative (.1) AT1G66920 305 / 6e-95 Protein kinase superfamily protein (.1.2) AT1G66910 305 / 4e-94 Protein kinase superfamily protein (.1) AT4G18250 306 / 4e-93 receptor serine/threonine kinase, putative (.1) AT5G39020 303 / 3e-92 Malectin/receptor-like protein kinase family protein (.1) AT1G66980 307 / 2e-91 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025554 [exp] 855 / 0 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10008362 [exp] 659 / 0 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10014924 [exp] 540 / 0 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 516 / 1e-176 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 509 / 3e-172 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 481 / 8e-167 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027085 [exp] 415 / 1e-141 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027013 [exp] 407 / 2e-139 AT5G38280 195 / 3e-58 PR5-like receptor kinase (.1) Lus10027006 [exp] 403 / 2e-135 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018600 [exp] 635 / 0 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125800 [exp] 615 / 0 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 610 / 0 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 608 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 594 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G126100 [exp] 588 / 0 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.017G007900 [exp] 573 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 568 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 564 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009500 [exp] 553 / 0 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025492 pacid=23144952 polypeptide=Lus10025492 locus=Lus10025492.g ID=Lus10025492.BGIv1.0 annot-version=v1.0 ATGCAGAAACTCTTAACACTATTTCTTCTGCTCCTAATCCAGAGCTGCCAAGCTGCAGATGGAGACTGTGAACCTTCTTCCTGTGGGAACATCCCAATCA TCAAGAACCCATTTCGACTCACAACCGATCCGACCAACTGCGGGAGCCAAGGCTACAACTTATGGTGCGAGAGCAATACAACAGTGCTGTACATAGACTC TGCAAGATACTATGTTCAGGCAATCAACTACGAAAATCTGACGATCAGATTGGTGGATGAAGGTGTAGCAGCAAAGGGAAACTGCTCCTCGCTCCCTCAC AACCCTTTGTCCGAAAACAGCTTCTACTTCTTGGATTCTTACATGGCCACAAGGGACAGGAAGGGGTTCCTGGCCATGTCAGCTAAAGAGGAGCACTTGA ATGAGGTGTTGACTCTGGTAAGCTGTGAGAATCCTGTCAGCTCTGCAATGTTTATGGAAACAGCTCCTTGCATCAACAGAACAGGAAATTCTTCGCGGTA TGCAGTTATCGGTGGTGGCGTGAAAGCATCAAGTTTGGCAAAGATGTGCAGAGTTGATATGATGGCTATGCTACCAAAGAAGAAGGGTTATGATAAGATA CCGTTTCAAGAAATTCACAGGCGGCTCGAGTATGGGTTCGAGCTCTCGTGGCACCTTTACGAATGCCGTCTCAAAAACTGCTTGGGTTTTGGTAGTTGCT ACCTTGACGGATACAACAATGTCCGTTGCAACGTTAAGAATGGTTTGTTTAACTCGGATACTCATGTTTGGCTTGTGGCTTTTTGCTTCGATGAAGGATG GTGGGACGCCATCGTATTCTACGCAGCAACCCTTGGAAGACTGTTACTTTCCATGGTGGTGGGGGCTCACTTGTTGATTACTCCTCTGGGAACCCCACTG GTGTGTGCATTTCTGATATATAAATGGCGAAGGAGACACCGATCAGCATACGACAAGATCGAGGAATTCCTTCAGAACCACAGCCTCATGACGGTCAGGT ACTCTTACTCAGAGATTAAGAAGGTCACTCGAGGCTTCAAGGACAAGCTAGGTGAAGGTGGTTGTGGTTCTGTTTACAAAGCAAAGCTTCGCAGCGGTGG TTTTGCAGGGGTCAAGATGCTTGGGAAGTCCGAAGCTGGAGGAGGAAAAGGTCAAGACTTTATGAGTGAAGTTGCTACCATTGGCAGGATTCACCATGCT AATATAGTGAGACTAATCGGCTTCTGCTCCGAAGGGACTAAGAGTGCTCTTGTCTACGAGTTCATGCCAAATGGCTCTCTTGACAAGCACATATTCCACG AGCAAGGATGCATCTCTTTGAGCTTGGACCAACTGTATCAAATTTCTGTCGGAGTGGCACGAGCGATTGAATACCTCCACAGCGGCTGTGCCATGCAGAT TCTGCATTTCGACATCAAACCGCACAACATTCTCCTTGACGAGAAGTTCAACCCGAAGGTGTCTGATTTCGGGTTGGCAAAACTGTATCAGGCTGGTGAC AGAGTTGCAACTTTGACTGCAGTAAGGGGAACCATAGGATACATGGCCCCTGAACTTTTCTACAAAAACATTGGAAGTGTCTCTTACAAAGCTGATGTGT ATAGCTTCGGAATGCTACTTTTGGAAATGACAGGTAAAAGGAACAACATGAACGCAGCAACGGATCATTCAAGCCAAATTTACTTCCCGTTCTGGGTTCA TGACCAGGTGTCCACACCTATGGTGGTCGGAGATGCTACATATGAGGAAAATACATCTGCGAAGAAGATGGTCATAGTAGGATTGTGGTGCATCCAAACA AATCCTGGAAACCGTCCTCCGATGAACAAAGTGGTGGAGATGCTTGAAGGAGACTTGGAAAGCTTGCAACTTCCTCCCAGACCAGTTCTGTATGCTGGAG AAAATTTAACAAAGAATGAACAAGGATTGACATCATACATATCATCATCATCATCATATGTGTCCTCTGACTGTTCAGAATTAATGTGTCGAGAGTGA
AA sequence Show only first row Show all	>Lus10025492 pacid=23144952 polypeptide=Lus10025492 locus=Lus10025492.g ID=Lus10025492.BGIv1.0 annot-version=v1.0 MQKLLTLFLLLLIQSCQAADGDCEPSSCGNIPIIKNPFRLTTDPTNCGSQGYNLWCESNTTVLYIDSARYYVQAINYENLTIRLVDEGVAAKGNCSSLPH NPLSENSFYFLDSYMATRDRKGFLAMSAKEEHLNEVLTLVSCENPVSSAMFMETAPCINRTGNSSRYAVIGGGVKASSLAKMCRVDMMAMLPKKKGYDKI PFQEIHRRLEYGFELSWHLYECRLKNCLGFGSCYLDGYNNVRCNVKNGLFNSDTHVWLVAFCFDEGWWDAIVFYAATLGRLLLSMVVGAHLLITPLGTPL VCAFLIYKWRRRHRSAYDKIEEFLQNHSLMTVRYSYSEIKKVTRGFKDKLGEGGCGSVYKAKLRSGGFAGVKMLGKSEAGGGKGQDFMSEVATIGRIHHA NIVRLIGFCSEGTKSALVYEFMPNGSLDKHIFHEQGCISLSLDQLYQISVGVARAIEYLHSGCAMQILHFDIKPHNILLDEKFNPKVSDFGLAKLYQAGD RVATLTAVRGTIGYMAPELFYKNIGSVSYKADVYSFGMLLLEMTGKRNNMNAATDHSSQIYFPFWVHDQVSTPMVVGDATYEENTSAKKMVIVGLWCIQT NPGNRPPMNKVVEMLEGDLESLQLPPRPVLYAGENLTKNEQGLTSYISSSSSYVSSDCSELMCRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38260			Protein kinase superfamily pro...		Lus10025492 [exp]	0	1
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	4.5	0.7964
AT3G28630			Protein of unknown function (D...		Lus10001124 [exp]	4.9	0.7698
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10036211 [exp]	7.1	0.7329
					Lus10020933 [exp]	9.2	0.7514
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	10.4	0.7728
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	15.0	0.7755
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	15.5	0.7697
AT3G16175			Thioesterase superfamily prote...		Lus10037582 [exp]	17.3	0.7374
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	19.1	0.7668
AT1G33530			F-box family protein (.1)		Lus10014979 [exp]	20.6	0.6864

Compare expression of checked genes

Lus10025492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.