Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01430 184 / 5e-61 Got1/Sft2-like vescicle transport protein family (.1.2) AT3G49420 184 / 5e-61 Got1/Sft2-like vescicle transport protein family (.1) AT3G03180 159 / 3e-51 Got1/Sft2-like vescicle transport protein family (.1) AT1G05785 103 / 2e-29 Got1/Sft2-like vescicle transport protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026704 [exp] 197 / 1e-65 AT3G49420 225 / 1e-76 Got1/Sft2-like vescicle transport protein family (.1) Lus10019570 [exp] 108 / 2e-29 AT1G05785 187 / 2e-59 Got1/Sft2-like vescicle transport protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036000 [exp] 186 / 4e-62 AT5G01430 201 / 2e-67 Got1/Sft2-like vescicle transport protein family (.1.2) Potri.007G124400 [exp] 186 / 6e-62 AT5G01430 199 / 5e-67 Got1/Sft2-like vescicle transport protein family (.1.2) Potri.014G151000 [exp] 115 / 4e-34 AT1G05785 157 / 3e-50 Got1/Sft2-like vescicle transport protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10025494 pacid=23145094 polypeptide=Lus10025494 locus=Lus10025494.g ID=Lus10025494.BGIv1.0 annot-version=v1.0 ATGGTTTCGTTTGAAATGAATGATCGCAAAAAAATTGGGATGGGACTGACAGGATTTGGCATCTTTTTCTCCTTTCTGGGGATCGTCTTCTTCTTTGACA AGGGACTACTTGCCATGGGAAATATCCTCTTTATCTCTGGAGTGGGTCTCACTATTGGACTGAAGTCTACTATGCAGTTCTTCATGAAACGTCAAAACTA TAAGGGGACTATCTCATTTGGTGCAGGTTTCTTCTTTGTTGTGATAGGATGGCCCATTATTGGCATGATTCTGGAGACTTATGGGTTTGTTATGCTCTTC AGTGGCTTCTGGCCAACACTCTCGGTATTCATCCAGAGGATACCAGTTCTTGGTTGGATCTTCCAGCTACCAGCAGTCAGAGCAGTAAGTGATCATTGA
AA sequence Show only first row Show all	>Lus10025494 pacid=23145094 polypeptide=Lus10025494 locus=Lus10025494.g ID=Lus10025494.BGIv1.0 annot-version=v1.0 MVSFEMNDRKKIGMGLTGFGIFFSFLGIVFFFDKGLLAMGNILFISGVGLTIGLKSTMQFFMKRQNYKGTISFGAGFFFVVIGWPIIGMILETYGFVMLF SGFWPTLSVFIQRIPVLGWIFQLPAVRAVSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10025494 [exp]	0	1
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	9.7	0.9242
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	12.0	0.9265
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	12.4	0.9223
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	15.0	0.9092
					Lus10011267 [exp]	15.1	0.9184
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000408 [exp]	22.4	0.9066
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	24.5	0.9194
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	25.6	0.9144
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032414 [exp]	25.7	0.9078
AT1G72510			Protein of unknown function (D...		Lus10015670 [exp]	26.5	0.9022

Compare expression of checked genes

Lus10025494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.