Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54380 49 / 2e-06 spliceosome protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026705 [exp] 439 / 2e-156 ND 45 / 5e-05 Lus10023803 [exp] 105 / 8e-29 ND 34 / 0.003 Lus10011880 [exp] 62 / 7e-11 AT1G54380 281 / 3e-90 spliceosome protein-related (.1) Lus10022813 [exp] 60 / 6e-10 AT1G54380 283 / 2e-91 spliceosome protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G124150 [exp] 66 / 5e-12 AT1G54380 253 / 2e-75 spliceosome protein-related (.1) Potri.017G036200 [exp] 62 / 1e-10 AT1G54380 264 / 2e-79 spliceosome protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025495 pacid=23144998 polypeptide=Lus10025495 locus=Lus10025495.g ID=Lus10025495.BGIv1.0 annot-version=v1.0 ATGCATCAGTACCCAGATACACATTTCGACATCGCCGCCGGCCGCCCATCCACTTCCACCGCTTCTTCCTCCTCTTCCTCTCTACTCGCCGCCGCGACCA AAGCCTCCACCAGACCATTCACAGGCAAACAAAGAAACCCACATTCTCGACATCTCGCCAAACCCGCCGTTCCACAAATATGGCAGCAGAAGAAAAAAGC CGCCGCTCAAGAAGAAACCCTGCTTCTTGGGTCCACCACTCACTGGACCATGTATTCTTGCCTCGATTCACGCCCCGCAGATTCAGGAAATGGCGGGTTC GACATCGTCGGCGTCCAGAGCTTCCTGGTGAAGAAGGACAAGAACTCTCTCGCTGAAATTGGAGGCAAAGGAGCAATCTTTAATAATGGAAAGAGCGGAT TTGAACGACCTCCTCTGAAAGTTCAAATGGTTGACGATACGGTGTTGATTGAATCCTCCGATTCAACTATCTTTTCGAAAAGGGCATCTAATGCAATGAA CTGGAAGAGGACCCAGAATCATCGAGGAGCTGCCAAGAACACAAACAAGATGGCAAGAAGGGAGGGCGAAGGTTCTCGTCATGAAGCTGGAAATGGTGCG GTGATCAAGAAGTACTCGAGGGAAGAGATGGAGGCTGTGAGGTTTGCGAACGGTCGGGAGCAGCGTAAGATCTGGACGAGCGTGTACAGTGGATTAGGAG CTCGTGTTGCGGAGGAGTATGAGAATTTGACTTCTTGCTGTGATAGCCAGAGGAATGCGCTGGGTCCCAGATTCGAGCCTAAACAGAGCCTTGGAGGAAC TCCAGTTGTTGTGGCCCCTCGTCTGCTTGGTGAGTTGTGTGAAATTTTCCATGCTGGGTTGATTATCTGTTCATAA
AA sequence Show only first row Show all	>Lus10025495 pacid=23144998 polypeptide=Lus10025495 locus=Lus10025495.g ID=Lus10025495.BGIv1.0 annot-version=v1.0 MHQYPDTHFDIAAGRPSTSTASSSSSSLLAAATKASTRPFTGKQRNPHSRHLAKPAVPQIWQQKKKAAAQEETLLLGSTTHWTMYSCLDSRPADSGNGGF DIVGVQSFLVKKDKNSLAEIGGKGAIFNNGKSGFERPPLKVQMVDDTVLIESSDSTIFSKRASNAMNWKRTQNHRGAAKNTNKMARREGEGSRHEAGNGA VIKKYSREEMEAVRFANGREQRKIWTSVYSGLGARVAEEYENLTSCCDSQRNALGPRFEPKQSLGGTPVVVAPRLLGELCEIFHAGLIICS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54380			spliceosome protein-related (....		Lus10025495 [exp]	0	1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	6.2	0.7628
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	11.5	0.7412
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	15.9	0.7550
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	24.2	0.7358
AT1G15260			unknown protein		Lus10025783 [exp]	28.3	0.7341
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	30.5	0.7310
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030628 [exp]	43.7	0.6856
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	46.6	0.7097
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	47.0	0.6860
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	48.0	0.7201

Compare expression of checked genes

Lus10025495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.