Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59350 603 / 0 Protein kinase superfamily protein (.1.2.3) AT2G43230 587 / 0 Protein kinase superfamily protein (.1.2) AT2G30740 575 / 0 Protein kinase superfamily protein (.1) AT1G06700 561 / 0 Protein kinase superfamily protein (.1.2) AT2G30730 493 / 3e-176 Protein kinase superfamily protein (.1) AT2G47060 473 / 5e-168 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT2G41970 471 / 5e-167 Protein kinase superfamily protein (.1) AT3G17410 468 / 9e-166 Protein kinase superfamily protein (.1) AT1G48210 459 / 1e-162 Protein kinase superfamily protein (.1.2) AT3G62220 457 / 7e-162 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026706 [exp] 724 / 0 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 699 / 0 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 695 / 0 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009983 [exp] 486 / 5e-173 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10038042 [exp] 484 / 2e-172 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10010072 [exp] 483 / 8e-172 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1) Lus10004524 [exp] 479 / 2e-170 AT3G62220 591 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 475 / 1e-168 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1) Lus10029295 [exp] 474 / 3e-168 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036300 [exp] 639 / 0 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G124000 [exp] 635 / 0 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G059600 [exp] 488 / 7e-174 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 483 / 4e-172 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.002G188600 [exp] 479 / 2e-170 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 475 / 7e-169 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 435 / 4e-153 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.014G119100 [exp] 275 / 3e-86 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 274 / 9e-86 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 268 / 7e-83 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10025496 pacid=23145001 polypeptide=Lus10025496 locus=Lus10025496.g ID=Lus10025496.BGIv1.0 annot-version=v1.0 ATGCGTCGGTGGCTTTGCTGCACCTGCCAGATGGAGGAGGCATACACAGCACATGAAAATGAGCTCCTTACGAGCCCAAAGCACAACCATGATGGGCACC CAAAAGGCACAAATGCATCAGCCCTTGTCAAACCTGAAGTACAAAAGGAAGTGTCGCCTATTCAAGTGCCTGCTCTGTCATTAGATGAAATGAAAGAGAA AACTGATAATTTTGGGTCGAAGGCACTTATCGGTGAAGGATCTTATGGAAGGGTGTATTATGCAAACTTAGATAATGGAAAAGCTGTGGCTGTGAAAAAA CTTGACGTGTCGAGTGAGCCAGAAACCAATAACGAATTCTTAACTCAGGTTTCTATGGTATCAAGATTGAAACATGAAAACTTTGTGGAATTGCAAGGTT ATTGTGTGGCGGGAAATCTCAGAGTGCTTGCTTATGAGTTTGCAACTATGGGATCGCTTCATGACATATTGCATGGCCGAAAGGGAGTTCAGGGGGCACA ACCTGGTCCAGTGCTGGACTGGATGCAGCGAGTCAGAATCGCAGTTGATGCAGCAAGGGGTTTGGAATATTTGCATGAGAAGGTTCAGCCTTCTATAATA CACCGAGATGTCAGATCGAGCAATGTTCTTCTATTTGAGGATTTCAAAGCCAAAATTGCAGATTTCAACCTATCGAATCAGTCCCCTGACATGGCTGCAC GCCTGCATTCTACTCGCGTTCTGGGAACTTTTGGTTATCATGCTCCAGAGTATGCAATGACTGGACAATTGACACAGAAGAGTGATGTTTACAGCTTCGG GGTGGTTCTCCTCGAACTTCTCACGGGAAGGAAACCAGTCGACCATACCATGCCCCGAGGGCAACAAAGTTTAGTCACCTGGGCTACTCCAAGGTTAAGT GAAGACAAAGTGAAGCAATGCGTGGACCCAAAGCTGAAAGGAGAATATCCACCTAAGGGAGTCGCCAAGTTGGCTGCGGTGGCAGCATTGTGCGTGCAAT ATGAATCGGAGTTTCGGCCGAACATGAGCATAGTTGTGAAGGCTATGCAGCCATTGCTGAAGTCTCAAGTTCCAGCTGCTGCTGCCCCAGAATCCTGA
AA sequence Show only first row Show all	>Lus10025496 pacid=23145001 polypeptide=Lus10025496 locus=Lus10025496.g ID=Lus10025496.BGIv1.0 annot-version=v1.0 MRRWLCCTCQMEEAYTAHENELLTSPKHNHDGHPKGTNASALVKPEVQKEVSPIQVPALSLDEMKEKTDNFGSKALIGEGSYGRVYYANLDNGKAVAVKK LDVSSEPETNNEFLTQVSMVSRLKHENFVELQGYCVAGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSII HRDVRSSNVLLFEDFKAKIADFNLSNQSPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLS EDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKAMQPLLKSQVPAAAAPES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	1.0	0.8741
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	2.0	0.8537
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	2.4	0.8241
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	2.6	0.8029
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	4.0	0.8002
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	4.2	0.7977
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	5.5	0.7958
AT2G46710			Rho GTPase activating protein ...		Lus10030213 [exp]	6.0	0.8059
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	6.0	0.8180
AT5G15880			unknown protein		Lus10034091 [exp]	6.9	0.7927

Compare expression of checked genes

Lus10025496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.