Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22660 615 / 0 Polynucleotide adenylyltransferase family protein (.1.2) AT2G17580 55 / 2e-07 Polynucleotide adenylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026711 [exp] 999 / 0 AT1G22660 542 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2) Lus10036013 [exp] 61 / 2e-09 AT5G23690 649 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10016699 [exp] 54 / 3e-07 AT2G17580 453 / 1e-149 Polynucleotide adenylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G111300 [exp] 785 / 0 AT1G22660 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2) Potri.012G105000 [exp] 57 / 2e-08 AT5G23690 663 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.015G104300 [exp] 57 / 2e-08 AT5G23690 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.003G164400 [exp] 56 / 4e-08 AT1G28090 569 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2.3) Potri.005G100100 [exp] 54 / 2e-07 AT2G17580 459 / 4e-150 Polynucleotide adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01743 [flax] [poplar] PolyA_pol Poly A polymerase head domain
Representative CDS sequence Show only first row Show all	>Lus10025499 pacid=23144956 polypeptide=Lus10025499 locus=Lus10025499.g ID=Lus10025499.BGIv1.0 annot-version=v1.0 ATGGTGCCATATTTGAACTCCATTATTAAATTGCAGCCTTCTCGTCTCCTTCTCCTGTCTCCCGCTCTCTCCCGCGCCTCTTCAAGCTGGTTCCTAGGGT CCGCTGCCCTTAGTTCAGCTCGAATCGTGAATCCAAACACCTCACTTCTCCATCTCCGTTCATCCACAACAATGACTACCGTTCCCTCTTCGAAGACGGT GGCGGTTCCGGTAAGGGACAACATTGAACTGACGGATATCGAGAGGAAGATTTTCGACAGGCTCCTAGCCACTATCAGCCACTTCAATCTCGACATAGAG CTCCGCGTCGCCGGCGGCTGGGTCCGTGACAAGCTGCTGGGCAAGGATTGCTACGACATTGATATTGCTATTGACAAAATGTTTGGGAGTGAATTTGTTG ATAAGGTAAGAGAGTATTTGGAAACCATTGGTGAAGAAGCTCAGGGAGTTGGTGTCATTGCTCGCAATCCTGACCAATCCAAACACTTGGAAACTGCAAG GATGAGGTTGTTTGATTTGTGGATTGATTTTGTTAACTTGAGGTGTGAAGATTACAGTGATAGCAGTCGGATCCCAACTATGACGTTTGGCACAGCAAAA GAAGATGCATATAGAAGAGATTTAACCATTAACAGCTTGTTCTATAATATTAATGAAAAATCAGTTGAAGACCTTACAGGCAGAGGCATTGATGATCTAA AATCTGGAAAAATAGTAACCCCTTTACCTCCGAAGGAGACCTTTTTGGATGATCCACTTCGAGTTCTTAGAGCTATTCGGTTTGGTGCAAGGTTTGAGTT TGTGCTAGATGAAGATCTCAAAGAGGCTGCTAAAACCGAGGAAGTGAAAAATGCTCTTGCTGCTAAAATTAGCAAAGAGCGTATTGGAACTGAAATTGAG CTAATGATCTCTGGGAATCAACCTGTGAAGGCTATGTCATACATAACTGATTTGACATTATATATGGTTGTCTTCTGTCTCCCTCCTGAGGTCCAGCCGG ATGTCTACCAAGGATGTGAAAAGATGTCCATAGCTTACTTGGATGCAGCATGTAGTCTGATTCATTCAATCGGTTATGCTTCCTTCACTGATCAGCAAAG ACGGCTTGCTTTATATGCAGCTCTGTTTCTTCCTTTCAGAGACATAACATACAAGGTTGCAAAAGGAAAAATGATGCCTGTTGTTAACTATATCTTCAGA GACTCTCTTAAACAGAAAGCCAGTGATCCAGAAATGGTCATGAAGATACACCAGTCATTAGATAAATTTGCTACATTGATTCCTGCACTTACATCCAAGG CCGAAACCAAAACCATACCTCCTGAAATTGATGAGGAAATGGAATTCGATGATGTACCCGCAACTTCAAAGCTCCGAATTTCAACAGGTACAACCAAGTT TCTTGCTTTGTGCTACTATGGTTTGAAGTTCTTTCTGCAAGCTTCAACCCTTTCTCGTTCAGGATTCCTATTGCGAGACGTAAAAGATCTTTGGCGAATT GCTGTACTCATATCCACACTATTGCATCCTTCCGACTTGGCTTCTGTCGGGAAGGTTAGTCAACTTGAGCTTGACAAGAGGAAGGACTTGTTCAAAGCAG CAGAGGATGCCATCACTGGACTAGGTCTGGACAATGTGTGGGACATGAAGCCATTGATCAACGGTAAAGAAATCATCAATATTCTTCAGCTTAAATCAGG AGGACCCCTTGTTCGAGAATGGCAACAAAAACTACTGGCATGGCAACTGGCTCATCCAACTGGGACTGCAGAGGAGTGCCTTGACTGGATGAAGAAAACC CACACCAAGCGTGCCAAAACTGAATAG
AA sequence Show only first row Show all	>Lus10025499 pacid=23144956 polypeptide=Lus10025499 locus=Lus10025499.g ID=Lus10025499.BGIv1.0 annot-version=v1.0 MVPYLNSIIKLQPSRLLLLSPALSRASSSWFLGSAALSSARIVNPNTSLLHLRSSTTMTTVPSSKTVAVPVRDNIELTDIERKIFDRLLATISHFNLDIE LRVAGGWVRDKLLGKDCYDIDIAIDKMFGSEFVDKVREYLETIGEEAQGVGVIARNPDQSKHLETARMRLFDLWIDFVNLRCEDYSDSSRIPTMTFGTAK EDAYRRDLTINSLFYNINEKSVEDLTGRGIDDLKSGKIVTPLPPKETFLDDPLRVLRAIRFGARFEFVLDEDLKEAAKTEEVKNALAAKISKERIGTEIE LMISGNQPVKAMSYITDLTLYMVVFCLPPEVQPDVYQGCEKMSIAYLDAACSLIHSIGYASFTDQQRRLALYAALFLPFRDITYKVAKGKMMPVVNYIFR DSLKQKASDPEMVMKIHQSLDKFATLIPALTSKAETKTIPPEIDEEMEFDDVPATSKLRISTGTTKFLALCYYGLKFFLQASTLSRSGFLLRDVKDLWRI AVLISTLLHPSDLASVGKVSQLELDKRKDLFKAAEDAITGLGLDNVWDMKPLINGKEIINILQLKSGGPLVREWQQKLLAWQLAHPTGTAEECLDWMKKT HTKRAKTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	0	1
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	1.0	0.8968
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	2.4	0.8367
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	9.9	0.8045
AT4G39860			unknown protein		Lus10041695 [exp]	11.4	0.8198
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	13.2	0.7857
AT3G04160			unknown protein		Lus10021983 [exp]	19.0	0.7898
AT3G53320			unknown protein		Lus10023170 [exp]	19.3	0.8209
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	19.7	0.8197
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	19.8	0.8197
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	22.6	0.8178

Compare expression of checked genes

Lus10025499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.