Plant FIBer expression Database

Lus10025500 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026713
[exp]
76 / 2e-17 ND 37 / 8e-04
Lus10012704
[exp]
46 / 6e-06 AT2G14095 54 / 5e-09 unknown protein
Lus10001299
[exp]
44 / 2e-05 AT2G14095 53 / 2e-08 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10025500 pacid=23145089 polypeptide=Lus10025500 locus=Lus10025500.g ID=Lus10025500.BGIv1.0 annot-version=v1.0
ATGTATACCACTTTGGCGGCGGCCGGAAATACAAACATGTTGTCCGACAACTGGTCATCGTCACCAGTAGCGCTCCGACACGTAGCGAGTGGTGGTTCCG
GCGGCGGGAAGATCAATAACGTCTATACTACTAATCATCGTCGCCGTCGTCATCAAACCATCGCAAACTACCGGCTGCTTAACTTCCTTCATTCAACGTC
AAACAAGTCGAAGAACGTGGTGGTTGTGCACAGTAATGTTGGGTCTGGACCCGCCGCCAGTGATCCGTCCACTCCGCCTGGTTCTAATTGGAGAGGGTGG
CTTGTAGGGGTGATAATGAGTTTCCTTTTACCCTTCTGGAGGAACCAATTATGGTCACTGAAAAAGTTAGAAGATAAGGTAGAAGCGGTGGTGGAGACGA
TAGAAGAAGTGGTGGAGACGGTGGAGGAGATGGCGGAGAAAGTGGAGGAAGTGGCGGACGAGATGGAAAAGAGTCTGCCGGAAGGACAACTTAAGCATAT
GCTGGAAGACATCGAGGAGGCCGCCGATAAAGCAGGGAAAGCCGCCAAACTTGCCCATCAAGTACTTGATAAGTTCAATTGTGATGGGTGGGTCAAGACC
TCTCACGCCATAAGCGAGAATGATACCACTAGACCAAATGTCATAGAATACAAGGTACAAGCAGCAGAGGATCAAGTGGAATCCTTGATCGACGGAGCTA
CTGCTAATAAAGAGCAGAAGACAACCAGTAGTGGTACCACAGCCAAGGTTTAG
AA sequence
>Lus10025500 pacid=23145089 polypeptide=Lus10025500 locus=Lus10025500.g ID=Lus10025500.BGIv1.0 annot-version=v1.0
MYTTLAAAGNTNMLSDNWSSSPVALRHVASGGSGGGKINNVYTTNHRRRRHQTIANYRLLNFLHSTSNKSKNVVVVHSNVGSGPAASDPSTPPGSNWRGW
LVGVIMSFLLPFWRNQLWSLKKLEDKVEAVVETIEEVVETVEEMAEKVEEVADEMEKSLPEGQLKHMLEDIEEAADKAGKAAKLAHQVLDKFNCDGWVKT
SHAISENDTTRPNVIEYKVQAAEDQVESLIDGATANKEQKTTSSGTTAKV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G14095 unknown protein Lus10025500
[exp]
0 1
AT5G17450 HIPP21 heavy metal associated isopren... Lus10028531
[exp]
6.7 0.9290
AT5G53110 RING/U-box superfamily protein... Lus10032382
[exp]
6.9 0.9480
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Lus10028227
[exp]
7.2 0.9496
AT5G45690 Protein of unknown function (D... Lus10005416
[exp]
8.4 0.9375
AT5G23750 Remorin family protein (.1.2) Lus10001477
[exp]
10.4 0.9330
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Lus10011979
[exp]
12.6 0.9476
AT2G29350 SAG13 senescence-associated gene 13 ... Lus10024358
[exp]
16.2 0.9249
AT4G30420 nodulin MtN21 /EamA-like trans... Lus10019970
[exp]
16.7 0.9358
AT5G45890 SAG12 senescence-associated gene 12 ... Lus10028501
[exp]
17.0 0.8908
AT3G25400 unknown protein Lus10020407
[exp]
17.5 0.8885

Lus10025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.