Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026715 [exp] 199 / 4e-65 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025501 pacid=23144972 polypeptide=Lus10025501 locus=Lus10025501.g ID=Lus10025501.BGIv1.0 annot-version=v1.0 ATGTTTAGTGCAGCAACTACTAGTATTATTACAACTCCAGCTGTCCCAGCGGCCGGAGTCCTCCACCACCGTGTCGAACCTCTCCGACGACTGACAGCGA AATGCTCACTACCGGAAGCAACCCTGCCGGCGGAGACAATGTTTGGTGTTGTCGCTCCCACCAAACTGCACTCTTCTTCACGCGCTTCCAACACTGTCCG GAGGGCCGCAGGGGTTGATCCGGTGACGTTGGCTGACTCTTCTGCTTCTCTTCAGGCTGCCGCCGGGATCTCCCTTCCCTTTAATCTCCCAGATATCGAC TCCAACAACTGGCCGGTGTGGATGCTGGGTGCTGTAGCAACTTTCGTGATACCTTTGGCGACCGGCAAGCTGGGGCCTTTGGGGAAGCTATTTGATAAGT TTGATGCGGCGGGGGGGCCGGCGCAAGCAGTGGCGGACATGGTGGATGACGTGGCGGAGAAAGTGGAGGAGGTGGCCGACGACATCGGAAACAGCTTGCC GGCGGGTGCTCTCCAAGGCGCCCTTTAG
AA sequence Show only first row Show all	>Lus10025501 pacid=23144972 polypeptide=Lus10025501 locus=Lus10025501.g ID=Lus10025501.BGIv1.0 annot-version=v1.0 MFSAATTSIITTPAVPAAGVLHHRVEPLRRLTAKCSLPEATLPAETMFGVVAPTKLHSSSRASNTVRRAAGVDPVTLADSSASLQAAAGISLPFNLPDID SNNWPVWMLGAVATFVIPLATGKLGPLGKLFDKFDAAGGPAQAVADMVDDVAEKVEEVADDIGNSLPAGALQGAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025501 [exp]	0	1
					Lus10025502 [exp]	1.0	0.9683
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	2.4	0.9432
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	2.6	0.9285
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	3.2	0.9355
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	3.5	0.9419
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	4.7	0.9238
AT4G37030			unknown protein		Lus10011021 [exp]	5.2	0.9258
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	6.3	0.9358
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	6.5	0.9337
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	7.1	0.9257

Compare expression of checked genes

Lus10025501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.