Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026716 [exp] 463 / 7e-163 ND / Lus10024934 [exp] 390 / 6e-132 ND / Lus10020249 [exp] 365 / 8e-122 ND / Lus10031082 [exp] 258 / 2e-80 ND / Lus10002735 [exp] 123 / 5e-30 ND / Lus10016109 [exp] 107 / 1e-24 ND / Lus10029184 [exp] 101 / 1e-22 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10029186 [exp] 93 / 1e-19 AT1G24020 78 / 2e-16 MLP-like protein 423 (.1.2) Lus10010702 [exp] 92 / 2e-19 AT1G24020 79 / 4e-17 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10025503 pacid=23145071 polypeptide=Lus10025503 locus=Lus10025503.g ID=Lus10025503.BGIv1.0 annot-version=v1.0 ATGGCGGCGACAACATTGCCAAGGTTTGCCATGTTCTATTCCGGAAACTGGGGTAGATACGTGAGCTACATGTCCGACGAAGGAGGGGAGTTTAACCAGA TCCTGAAAGTAAGTGCCCGCAAGGTATCAAACCCGCGTTCGAGATTCGAGGTCGAACCGTCCAATGTCCACCCGACAATGGTCCACATCCGGAGTTGTTA CGATAACAAGTACCTCAGGCGGCGGTCAGAGGAAGAGTGGTGGATTGTCGCAGCAGCCGACAGTCCAAACGACGACCAATCTTCGTGGTCGTCCACCTTG TTCCAACCCGAGTTCGTAACCAGTGCTGGTTTGATCTCGGTTCGGCTTCTTCACTTCCAGCTAGGACAGTATGCACAGTGGTACGACAATATGAGTCACC CGTACCACATGTGCATATGGGCAGCGTCAAAAGACGCTGCTAACCCTGACCCCACGACTCTGTTCGAAGTCGTTGACTGGGAGTCGCTGGTCATACTACC GAAACACCTGGCTTTCAAAAGCAACAACGACCTCTACCTCGGCGTTGTTGGTGGCGATGACGTGGGTAGTGATCAAGGTCTTTTGCAGTTCCAGATAGGT GACGTCGGAGACAAATCCGTCGAGAACATAGTTGACACTCGAATCGATGGAACTGTTCGCATCACTAACATCTCCCTCGATGCTTTCTGGATGCTCCGTG GCGAGAATTTCATATGGGCTAACGGCAAATCCATCCTCGCTCCCGTCCCCGAGTCCCTGTTTAGGCCGACTAAGGTGAACGAAAATACAATTGCTCTTCA AAATTTAGGAAACAACTTGCTATGCAAGAGATACACCAACGACGAAGTAAAAGACGGACTGAACGCCATGGAATCCGAGCTTACAGACTACACCAACTTG ATTCTCACCGAGCTAGTAACTTCCAGAACAATTACCGACATCAAGTTCCACCTCAACTACGGTCGGATCTACAACACCCAAGATATCAGGCTAAACCCAG GAATCACCGTGCAAAACGAGACAGAAGAAACACAAACCTTGGAGGTAAAGATTCCATACAAGAACATCAAGACAAGCACATGGACAGCGATTAACTCCTC CGGCCTCAAGTTGGGGCCCACTGTGAACATCCAGCCTGCACAAGTCCCTCACATCTCGGACGACTCTGCGATCGAGATGATTGATGATCCGTTCGAGTAT CTGTGGGGGGAGATGGTGTCGAAGGAAGCTATGGAGGTGAAAGTATACGGGTTGACTCTGCCGCCGTCGTCGATGGTTATTGTTAGGCTGTGGGCAAAGG TGGCTAGCTGTGATGTTCCTTTGACTTACACTAGGAAGGATGTTCTTGATGAGAGTACCAAAGAGGAGGAAGTTTACATCATGGAGGATGGTGTGTATAC TGGGACTAATTACTTCGAGCTCGAGGTTACTGTCACTCCGCCCCAGCCTTGGTAG
AA sequence Show only first row Show all	>Lus10025503 pacid=23145071 polypeptide=Lus10025503 locus=Lus10025503.g ID=Lus10025503.BGIv1.0 annot-version=v1.0 MAATTLPRFAMFYSGNWGRYVSYMSDEGGEFNQILKVSARKVSNPRSRFEVEPSNVHPTMVHIRSCYDNKYLRRRSEEEWWIVAAADSPNDDQSSWSSTL FQPEFVTSAGLISVRLLHFQLGQYAQWYDNMSHPYHMCIWAASKDAANPDPTTLFEVVDWESLVILPKHLAFKSNNDLYLGVVGGDDVGSDQGLLQFQIG DVGDKSVENIVDTRIDGTVRITNISLDAFWMLRGENFIWANGKSILAPVPESLFRPTKVNENTIALQNLGNNLLCKRYTNDEVKDGLNAMESELTDYTNL ILTELVTSRTITDIKFHLNYGRIYNTQDIRLNPGITVQNETEETQTLEVKIPYKNIKTSTWTAINSSGLKLGPTVNIQPAQVPHISDDSAIEMIDDPFEY LWGEMVSKEAMEVKVYGLTLPPSSMVIVRLWAKVASCDVPLTYTRKDVLDESTKEEEVYIMEDGVYTGTNYFELEVTVTPPQPW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025503 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	2.4	0.8899
					Lus10013963 [exp]	5.5	0.9043
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	7.5	0.8557
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	8.4	0.9017
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	11.0	0.8767
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	13.1	0.8894
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	14.5	0.8529
AT3G18150			RNI-like superfamily protein (...		Lus10029586 [exp]	14.5	0.7421
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10009924 [exp]	15.5	0.8166
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10026606 [exp]	15.8	0.7678

Compare expression of checked genes

Lus10025503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.