Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43210 272 / 4e-85 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026718 [exp] 689 / 0 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10026717 [exp] 687 / 0 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10026747 [exp] 50 / 5e-06 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036600 [exp] 355 / 3e-117 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.007G123800 [exp] 297 / 1e-95 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10025504 pacid=23144992 polypeptide=Lus10025504 locus=Lus10025504.g ID=Lus10025504.BGIv1.0 annot-version=v1.0 ATGGAGAGTTGCATCTCTGAGCTTGCATACAAAGGGTCCATCACTCAAGCAATTCTCGAATCCAAAGCGCAGAAGAAGCTTTTCGTTGTTTATATTTCAG GAAAGAATTCAGAGTCAGAGGAGTTGGAAAAATCAACATGGACTGATGTCAAGGTAGCAGAGACACTGTCGAAGTACTGCATTTTGTTGCATGTTCTTGA GGGAACTGAAGATGCTATAAACTTTTCAGCTATTTATCCACAAAAATCGGTTCCTGCTATAGCAGTTATTGGGTACAATGGCGTTCAGCTTTGGCAAAGT GAAGGATGCATAAGTGCTGAGGTCCTGGTGTCCAGCCTAGAGAAGGCATATTTGAGTCTTCATATTCAGGAAACAACTGCTAACGTCTTGACTGCTGCGG TTGCTAATAATAAATCTGAGACACCTGCTTCTGGGTCTTCAAATGGTGGCTCACTTGCCAATGAAAGTTCTTCAGCTGTTGTTTCTTCATCTCCAGCTGA GAGAAATGTGCAATCGACTGAGGTTACACATCATAGTGCTTCTAGGACAATAGAGGACAATAAATCTCATGACACTAAAGCTAAGGATGATGAAAATGTA TCTCCAAAGCCCTGCAGTAGCGAAAAGTCACTGAGAGTTGAGGATGAACAATCCCAAGCTTCCGCTGAAAGGACTGAGGTCAATCCCTCTAAGACGAACT CGGAAACAGTTGATTGTGTTTCTTCAGATGCAGAAATCAATCATGCTCTCCAAGAATATATCATTAATAACAATTCATGCATCTCTGAACAAGACCAAAA TTCCGAATCCCTAAATGACAGTAAGAGTGATGTGTCCAAAGTTACTGTGTCAAATGATGTTCATTTGAACATCAAGCTTCTCAATGGAACTAGCATAAAG GAGAAATTTTTGGTGTCAAGTACATTGAGAATGGTCAAAGACTTTGTGGATAACAACCCAGAGAGTGACTATGTTTCGTACGATCTTGCCATTCCTTATC CTCGTAAGGTGTTTGGTGAACAAGATTTAGACAGATCCTTATCAGACTTGGGTCTTTCTAGTAGACAAGCATTGATAGTGGTTCCTCGTCAAGGCGGTGT AAGTTACTATAAACAAGATTCTTCCGCCTCTGCGCAAGGTTCTGCTGCAAGCCTCGGAGGATACTTCGGATACGTTAGGAGAGCCATGTCTTTAATCAAT CCTCTTTCGTATGTTGGCGGGTCGAGTTCATCGACTTCAGAACCAGTTCAAAGTAACATGTGGCAGTACAGTCCGAATCCGGCACCACACCAAGAGGATC AGGCAGCTGCCGCTAATAATGTCAGGAGGAGGCAACCAACAACAACCTTTGGTTCTGGAAGCAACATTCACACTCTGAAACACGATGAAGATGATGACCG TCGTGATGGGAGAAACACCTTCTGGAATGGCAACTCGACACAATACGGTGGTGGCAATGATAATGACGCGAAGCCGTAA
AA sequence Show only first row Show all	>Lus10025504 pacid=23144992 polypeptide=Lus10025504 locus=Lus10025504.g ID=Lus10025504.BGIv1.0 annot-version=v1.0 MESCISELAYKGSITQAILESKAQKKLFVVYISGKNSESEELEKSTWTDVKVAETLSKYCILLHVLEGTEDAINFSAIYPQKSVPAIAVIGYNGVQLWQS EGCISAEVLVSSLEKAYLSLHIQETTANVLTAAVANNKSETPASGSSNGGSLANESSSAVVSSSPAERNVQSTEVTHHSASRTIEDNKSHDTKAKDDENV SPKPCSSEKSLRVEDEQSQASAERTEVNPSKTNSETVDCVSSDAEINHALQEYIINNNSCISEQDQNSESLNDSKSDVSKVTVSNDVHLNIKLLNGTSIK EKFLVSSTLRMVKDFVDNNPESDYVSYDLAIPYPRKVFGEQDLDRSLSDLGLSSRQALIVVPRQGGVSYYKQDSSASAQGSAASLGGYFGYVRRAMSLIN PLSYVGGSSSSTSEPVQSNMWQYSPNPAPHQEDQAAAANNVRRRQPTTTFGSGSNIHTLKHDEDDDRRDGRNTFWNGNSTQYGGGNDNDAKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	0	1
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	5.0	0.8694
					Lus10036407 [exp]	5.5	0.8146
					Lus10016961 [exp]	6.6	0.8034
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	7.3	0.8372
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	12.8	0.8373
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	14.2	0.8230
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10011451 [exp]	17.4	0.7850
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10025031 [exp]	17.9	0.8227
AT2G31130			unknown protein		Lus10000990 [exp]	18.7	0.8227
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	18.9	0.8110

Compare expression of checked genes

Lus10025504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.