Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31630 41 / 0.0004 B3 REM4 Transcriptional factor B3 family protein (.1) AT4G31690 40 / 0.0006 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025507 [exp] 99 / 1e-24 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026719 [exp] 94 / 1e-24 ND 35 / 0.004 Lus10026724 [exp] 93 / 8e-23 AT4G33280 42 / 2e-04 AP2/B3-like transcriptional factor family protein (.1) Lus10025533 [exp] 92 / 2e-21 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009214 [exp] 62 / 1e-12 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1) Lus10009688 [exp] 65 / 4e-12 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 64 / 5e-12 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 62 / 3e-11 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026720 [exp] 54 / 2e-09 AT3G18990 45 / 1e-06 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 45 / 1e-05 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 44 / 4e-05 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 40 / 0.001 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025505 pacid=23144938 polypeptide=Lus10025505 locus=Lus10025505.g ID=Lus10025505.BGIv1.0 annot-version=v1.0 ATGGTGGAAATCAGCATCAAACATCCAAATACCCGTTGGACAAACAAAAGCTCATCATTAATTAGCCATAGAATAAGCAAACTAAGGCCATGTCTTGTCA CTTCCTTATTGGTTGTCTTCCATTTCTTGAATCTTCCTCCTACTTCACTCATTACTAGTCCACAGATTCACAAAGAAGTAGATTTTCAACAGCTGTTTTT TCACTCTCCAAGAAGAAGAAGAAAAAAGAAAGACAAGCTAAGGAACAATGGCTGTGCATCTTCAAGCCAGGCCAGGCGTGGGGAGGAAGTTATCCGTTTC TTCAAGCTCATCTTTGATTCCACCATCCTTGAGAAGAAGGTGTGTATACCATTAACTTTTACGAGGCAACACTCGTTCTTGAGAGATGTGAAGCAGGTGA AGCTGGAGGTAGGGGACAAGGTTAGGTCAGTAAGGACCTGGCTCGATCGCGACATTTATGTCAGGCTCGGCGGTGGCTGGCGTAAGTTCGCAAAAGCAAA CTCAATCAAACTTGGAGATGTTTGCATGTTCAAGATGATCACTACATCCCCTGACGTCCGAATGAGGTCACCATCATTAGAGGTGTCTGAAGATGTTCAT TCAAGTAGCAGTTGTGTTCTATGTCTTAATTTGCTGGAATATTAA
AA sequence Show only first row Show all	>Lus10025505 pacid=23144938 polypeptide=Lus10025505 locus=Lus10025505.g ID=Lus10025505.BGIv1.0 annot-version=v1.0 MVEISIKHPNTRWTNKSSSLISHRISKLRPCLVTSLLVVFHFLNLPPTSLITSPQIHKEVDFQQLFFHSPRRRRKKKDKLRNNGCASSSQARRGEEVIRF FKLIFDSTILEKKVCIPLTFTRQHSFLRDVKQVKLEVGDKVRSVRTWLDRDIYVRLGGGWRKFAKANSIKLGDVCMFKMITTSPDVRMRSPSLEVSEDVH SSSSCVLCLNLLEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025505 [exp]	0	1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	2.6	0.9633
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	3.7	0.9627
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	5.2	0.9554
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	9.8	0.8928
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10021133 [exp]	13.2	0.9189
AT1G68585			unknown protein		Lus10035025 [exp]	14.3	0.9283
AT1G68585			unknown protein		Lus10021686 [exp]	15.3	0.9279
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	15.9	0.8520
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	16.1	0.9223
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	17.0	0.9171

Compare expression of checked genes

Lus10025505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.