Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49475 79 / 3e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 82 / 4e-19 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 77 / 4e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 72 / 1e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G16210 43 / 1e-05 B3 Transcriptional factor B3 family protein (.1.2) AT5G66980 42 / 5e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G09780 40 / 0.0001 B3 REM23 Transcriptional factor B3 family protein (.1) AT3G53310 38 / 0.0008 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 38 / 0.001 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025507 [exp] 182 / 2e-58 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 174 / 9e-56 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 137 / 4e-40 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 135 / 2e-39 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026720 [exp] 103 / 7e-30 AT3G18990 45 / 1e-06 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 94 / 1e-23 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 82 / 9e-20 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 82 / 1e-19 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 81 / 5e-19 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 89 / 6e-22 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 79 / 7e-18 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G230100 [exp] 76 / 4e-17 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 68 / 1e-14 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 66 / 5e-14 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 67 / 8e-14 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 66 / 3e-13 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 60 / 2e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 51 / 4e-08 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 49 / 1e-07 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025506 pacid=23145077 polypeptide=Lus10025506 locus=Lus10025506.g ID=Lus10025506.BGIv1.0 annot-version=v1.0 ATGGCTGCATCTTCAAGGCAGGAGGAAGTAAACCGTTTCTTCAGGATCATCTTCCAATCTACCATCATTGAAAAGAAGCTGATGATACCTAGGAAGTTCA TCACAGAGTTTGGACATCAGCTGTTCGGATGTGGTGATACAGCAACTTTGGAGGTTCCCATTGGAGACAAATGGAAAGTTGGGTTGGAGAGGGATACACA ACGGTTCGTTTGGTTCTGCAACCATGGATGGGAGAGATTTGCAGAGTTCTATTCTTTGGACTACGGCCATTGCTTGCATTTCGAGTACAAAGGTAGTTCG GTTTTCTCAGTAGTCATATGCACGATTTCTAAAGCTGAGATTGCGTACCCAACATTGAGCTTCCCTGCTGCCAATGTTTCCCTTCTCCGGACATCTTATT AA
AA sequence Show only first row Show all	>Lus10025506 pacid=23145077 polypeptide=Lus10025506 locus=Lus10025506.g ID=Lus10025506.BGIv1.0 annot-version=v1.0 MAASSRQEEVNRFFRIIFQSTIIEKKLMIPRKFITEFGHQLFGCGDTATLEVPIGDKWKVGLERDTQRFVWFCNHGWERFAEFYSLDYGHCLHFEYKGSS VFSVVICTISKAEIAYPTLSFPAANVSLLRTSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025506 [exp]	0	1
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	6.2	0.9175
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	8.8	0.9159
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	9.8	0.8676
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	10.8	0.9159
					Lus10040397 [exp]	12.5	0.9159
					Lus10006918 [exp]	14.0	0.9159
					Lus10007508 [exp]	15.3	0.9159
AT1G80780			Polynucleotidyl transferase, r...		Lus10032797 [exp]	15.3	0.6827
AT5G58400			Peroxidase superfamily protein...		Lus10030146 [exp]	15.4	0.6806
					Lus10027066 [exp]	16.5	0.9159

Compare expression of checked genes

Lus10025506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.