Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18960 91 / 1e-21 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 87 / 2e-20 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 84 / 3e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 84 / 2e-18 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 73 / 2e-14 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 68 / 1e-12 B3 REM5 transcriptional factor B3 family protein (.1) AT5G66980 59 / 1e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G09780 57 / 3e-09 B3 REM23 Transcriptional factor B3 family protein (.1) AT4G31690 56 / 1e-08 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31680 54 / 5e-08 B3 REM8 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026724 [exp] 341 / 1e-118 AT4G33280 42 / 2e-04 AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 289 / 4e-98 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 213 / 3e-67 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 213 / 5e-67 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 182 / 6e-58 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 141 / 2e-39 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026719 [exp] 128 / 6e-37 ND 35 / 0.004 Lus10026720 [exp] 124 / 5e-36 AT3G18990 45 / 1e-06 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10022473 [exp] 111 / 2e-28 AT3G18990 78 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 102 / 1e-24 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 90 / 5e-20 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 89 / 9e-20 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 78 / 4e-16 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 71 / 3e-14 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 68 / 3e-13 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 66 / 5e-12 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 66 / 5e-12 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 59 / 9e-10 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 57 / 5e-09 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025507 pacid=23144954 polypeptide=Lus10025507 locus=Lus10025507.g ID=Lus10025507.BGIv1.0 annot-version=v1.0 ATGGCATCTTCAAGCCAGGCTAAGCATGAAGAGAAAGTAATCCGTTTCTTCAAGATCATCTTCGAATCTACCATCCTTGACAAGAAGCTGAGGATACCTA GGAAGTTCATCAGTACTGAGTTTGGACAGCAACTGTTGGGATGTGATGCTGCAACTTTGGAGGTTCCCATTGGAGACAAATGGGAAGTTGGGTTGGAGAG GGATAGACAAGGCTTCGTTTGGTTCTGCAACGATGGATGGGAGAAATTTGCAAAGTTCTACTCTTTGGACTATGGTCACTTCTTGCTTTTCGAGTACAAA GGCCGCTCTGATTTCTCGGTAGTTATATGCGACATATCTGCTACTGAGATTGTGTACCCAACATTGAGCAACGTTGGCCGAGCTGTTGGAATTGAGCATG CGGACTCCCTTCCTCTGGAGATCTTTTGCGAGGTTGATGCTACTGCTGCAAATGAGAAAGGCAAATCTCCTATGGTTGATGATTCTGCAGGCAATGTGAG CAAGGCAGAAACTGTGATCAATGAAGAGAAAGAAGGTACGAACTTGGATGATGCTTCTGGAAATCTATTCGGATCGGGACATCCCTCGTTCGAGATCAAA ATCAAAGCATCTCATCTGTGTTCTAGGCAGCAAAGACGTATACCATTAAGTTTTACGAAGGAACACTCGTTTATGAGAGAAGTCGAGCAGGTGAAAATGG AGGTAGGGGACAACGTTTGGCCAGTAAGGGTTCGTCTCGCAAGCAGCAGGTATGTCCTGATCGCCGCTGGCTGGATTAGGTTCGCGGAAGATAACTCGTT GAAACTCGGAGATGTTTGTGTCTTCAAGGTGCTGACAACATCCCCTGAGGTCCGAATGAAGGTCACCGTCATTAGAGGTGTCTGA
AA sequence Show only first row Show all	>Lus10025507 pacid=23144954 polypeptide=Lus10025507 locus=Lus10025507.g ID=Lus10025507.BGIv1.0 annot-version=v1.0 MASSSQAKHEEKVIRFFKIIFESTILDKKLRIPRKFISTEFGQQLLGCDAATLEVPIGDKWEVGLERDRQGFVWFCNDGWEKFAKFYSLDYGHFLLFEYK GRSDFSVVICDISATEIVYPTLSNVGRAVGIEHADSLPLEIFCEVDATAANEKGKSPMVDDSAGNVSKAETVINEEKEGTNLDDASGNLFGSGHPSFEIK IKASHLCSRQQRRIPLSFTKEHSFMREVEQVKMEVGDNVWPVRVRLASSRYVLIAAGWIRFAEDNSLKLGDVCVFKVLTTSPEVRMKVTVIRGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025507 [exp]	0	1
AT3G52260			Pseudouridine synthase family ...		Lus10023503 [exp]	7.7	0.7833
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005773 [exp]	43.6	0.7688
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	62.5	0.7460
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	123.3	0.7392
AT1G15320			unknown protein		Lus10025746 [exp]	135.8	0.7222
AT3G14460			LRR and NB-ARC domains-contain...		Lus10029705 [exp]	208.4	0.7153

Compare expression of checked genes

Lus10025507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.