Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59010 511 / 2e-177 PME61, PME35 pectin methylesterase 61 (.1) AT2G43050 464 / 2e-159 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 379 / 6e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 365 / 1e-119 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G11580 351 / 1e-114 ATPMEPCRA methylesterase PCR A (.1) AT2G45220 348 / 6e-114 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 345 / 2e-112 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 341 / 3e-110 ATPME2 pectin methylesterase 2 (.1) AT3G14310 341 / 4e-110 ATPME3 pectin methylesterase 3 (.1) AT5G04960 321 / 9e-103 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026729 [exp] 540 / 0 AT3G59010 409 / 2e-141 pectin methylesterase 61 (.1) Lus10018103 [exp] 366 / 2e-119 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 346 / 6e-113 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 345 / 2e-112 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015877 [exp] 342 / 8e-112 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 341 / 3e-111 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 339 / 3e-111 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 338 / 1e-109 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10022412 [exp] 339 / 4e-107 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149700 [exp] 531 / 0 AT3G59010 565 / 0.0 pectin methylesterase 61 (.1) Potri.002G145500 [exp] 385 / 3e-128 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 380 / 3e-125 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 375 / 2e-124 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 374 / 3e-124 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 376 / 1e-123 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 374 / 2e-123 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.012G126800 [exp] 369 / 7e-122 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 369 / 7e-122 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 361 / 1e-118 AT1G11580 638 / 0.0 methylesterase PCR A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10025510 pacid=23144939 polypeptide=Lus10025510 locus=Lus10025510.g ID=Lus10025510.BGIv1.0 annot-version=v1.0 ATGTCGACCTTCTCCCATGCAACCACCATTCCCCTTATCTTCGTCCTCCTAATAACCACAACCTCATCAACCCCAACTTCCTCCTCCTCACTTCACTTCT CCAAGTCATCTAGATCATCCTCGTCGACAAACTCGAAAAAGGCGCTCTTCGAGGATTCGATCATGTCTACCCTGGCCCAAGCTCAGTCGGTCCTCTCCTC CGCGACAGCTCTTGCGATGGCCTCCACGACACAGCATGATGATGGTCCATCCGATCCATCCAATATTAAAACTGCGGTGGTGGGGCCCACGCATGACTGT CTTGACCTCCTGGAGGACACGCTGGAGCAACTCTCAAACGTGGCATACCGAGGACATCATGACCCGACCGACGTCCAAACGTGGCTCAGCGCCGCCCTTA CCAACCAAGTAACTTGCAAAGAAAGTCTCCTCCTCACAAAACAATCTCACCATAACAAAGCCACCATACTCCTCGAAACTCTAGCTCACAACATGACTCG AACCCTAGGAAACTCTCTAGCTCTGTACGTGAACCATGTCATGAATGACAAATATCATAACTACCCTTCTTCTAGTCGTCCGGTCGGTGGAGGAGGCCGG AAGCTGTTATTAACGGAGGACGATAACAAGTTTCCGGCGTGGCTGCCGGCGGCGAAGAGGAAGCTTCTGGAAGCTTCGGTGGGGGAGCTGGAACCACATG CCGTGGTGGCGAAGGACGGGAGTGGAACCCACACTAGTATAGCGGAGGCGGTTAGGGATGTGACGGCTGCGGCGGCGGTCGGAACTATGGCGGATGGCGG TGGTGGTGGCAGCGGCGTAATATACGTGAAGGCTGGGACTTATAAGGAAAACCTGAATTTCAAGACGAAGCAAAAGAACGTAGTGTTGGTTGGGGACGGG AAGGGCAAAACCGTCATTGTGGGGAGCAGAAACGCCGACGATGGATCCACCACCTACGACTCGGCCACCGTTGCCGCAATGGGCGACGGATTCATGGCCC GAGACCTGACGATGGTAAACAGCGCGGGACCATCGAAGCACCAAGCGGTAGCACTCCGGGTCGGGTCGGACCGGGCCGTGATATTCCGGTGCTCCATTCA GGGGTACCAGGACACGCTCTACACGCTCTCCAAGCGCCAGTTCTACCGCGAAACCGACATCTACGGCACAGACGACTTCATCTTCGGCAACTCCGCCGTC GTCTTCCAGAACTGCAACATATACACCCGGTCGGGATCCCGCGGGGACAACTTCATAACCGCCCAGGGTCGGACCGACCCGAACCAGAACACAGGGATCT CCATCCACAACTGCAGGATCGAATCGGACGGTTCGGGGGCCAAGACCTACCTAGGGAGGCCGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAGTCAGT GATCGGAGGCCACGTGGCGTCCGCAGGGTGGGCCCCCTGGTCTGGCGGGTTCGCCCTGAAGACGCTTTACTATGCAGAGTACATGAACTCGGGTCCCGGA GCGGGGATTTCGGGTAGGGTGTCGTGGCCCGGGTATAAGGGAGCGGTTGGACCATTGGAGGCCGGGAAATTTACGGTGGCCGGTAAATTTACGGTTGGGC AGCGTATTGGCGGGAACTCGTGGCTACCGTCCACCGGAGTGTCGTTTGACGCCGGATTGATTGGTGTCTAG
AA sequence Show only first row Show all	>Lus10025510 pacid=23144939 polypeptide=Lus10025510 locus=Lus10025510.g ID=Lus10025510.BGIv1.0 annot-version=v1.0 MSTFSHATTIPLIFVLLITTTSSTPTSSSSLHFSKSSRSSSSTNSKKALFEDSIMSTLAQAQSVLSSATALAMASTTQHDDGPSDPSNIKTAVVGPTHDC LDLLEDTLEQLSNVAYRGHHDPTDVQTWLSAALTNQVTCKESLLLTKQSHHNKATILLETLAHNMTRTLGNSLALYVNHVMNDKYHNYPSSSRPVGGGGR KLLLTEDDNKFPAWLPAAKRKLLEASVGELEPHAVVAKDGSGTHTSIAEAVRDVTAAAAVGTMADGGGGGSGVIYVKAGTYKENLNFKTKQKNVVLVGDG KGKTVIVGSRNADDGSTTYDSATVAAMGDGFMARDLTMVNSAGPSKHQAVALRVGSDRAVIFRCSIQGYQDTLYTLSKRQFYRETDIYGTDDFIFGNSAV VFQNCNIYTRSGSRGDNFITAQGRTDPNQNTGISIHNCRIESDGSGAKTYLGRPWKEYSRTVVMQSVIGGHVASAGWAPWSGGFALKTLYYAEYMNSGPG AGISGRVSWPGYKGAVGPLEAGKFTVAGKFTVGQRIGGNSWLPSTGVSFDAGLIGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	0	1
AT4G33040			Thioredoxin superfamily protei...		Lus10024982 [exp]	2.2	0.9519
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	2.8	0.9638
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10013055 [exp]	4.6	0.9552
					Lus10020641 [exp]	4.7	0.9565
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	4.9	0.9500
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10007023 [exp]	7.3	0.9116
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	7.5	0.9524
AT2G30300			Major facilitator superfamily ...		Lus10042234 [exp]	8.0	0.9067
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	9.9	0.9392
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	10.2	0.9465

Compare expression of checked genes

Lus10025510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.