Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43060 76 / 8e-18 bHLH AtIBH1, bHLH158 ILI1 binding bHLH 1 (.1) AT4G30180 43 / 1e-05 bHLH bHLH146 sequence-specific DNA binding transcription factors;transcription regulators (.1) AT3G58850 41 / 3e-05 HLH2, PAR2 phy rapidly regulated 2 (.1) AT5G67060 39 / 0.0004 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G42870 37 / 0.001 PAR1 ,HLH1 HELIX-LOOP-HELIX 1, phy rapidly regulated 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026730 [exp] 165 / 4e-53 AT2G43060 97 / 4e-26 ILI1 binding bHLH 1 (.1) Lus10012670 [exp] 42 / 6e-05 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 41 / 0.0001 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030844 [exp] 40 / 0.0001 AT1G23965 48 / 2e-08 unknown protein Lus10042647 [exp] 40 / 0.0002 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 39 / 0.0006 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 39 / 0.0007 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232500 [exp] 86 / 2e-21 AT2G43060 79 / 1e-18 ILI1 binding bHLH 1 (.1) Potri.014G149800 [exp] 80 / 1e-19 AT2G43060 82 / 3e-20 ILI1 binding bHLH 1 (.1) Potri.002G060100 [exp] 46 / 1e-06 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1) Potri.005G201500 [exp] 44 / 3e-06 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.005G012400 [exp] 42 / 3e-05 AT1G09250 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G118300 [exp] 40 / 8e-05 AT2G47270 62 / 2e-13 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.014G027300 [exp] 40 / 0.0002 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 40 / 0.0002 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G099100 [exp] 40 / 0.0003 AT4G30410 135 / 1e-40 sequence-specific DNA binding transcription factors (.1.2) Potri.002G193300 [exp] 39 / 0.0003 AT2G47270 79 / 5e-20 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025511 pacid=23145072 polypeptide=Lus10025511 locus=Lus10025511.g ID=Lus10025511.BGIv1.0 annot-version=v1.0 ATGGCGTCAAAGGATGATAGTATCATCAGCAATACAATTTCAAGCTCTACACTAGAGAGAACCTTCGCCCACCAATTCCTCACTTCCCTCAAGAAACTAA GAACCAATAATCCGCCCAACACTAGGACGACAAGAAGACGACGCCGCAGCGTGAGAATCAAGTTAGCCGCCAATTCCTCCATGGCTCGAGCTGTCGGATC CCGGCGAGTATGGAGCCGGGCCCTCCTCTCAAGGAATATTAGAACCCGCGGCCGCCCCATCAACACGCCGCATTCGAGGAGGAAGAAGAGTCCGAGGAGT CGAGTCGAGAAGCTGAGGAAGCTTGTACCAGGAGGAACGAGTATGGGGATGGGTAAGCTGTTGGAAGAAACGGGCCATTACGTTCAGTGTTTGGCCGTTC AGGTTAGGGTGATGCAGACCATAGCCGATCATTACTCCGGTCTGAGTAATTAA
AA sequence Show only first row Show all	>Lus10025511 pacid=23145072 polypeptide=Lus10025511 locus=Lus10025511.g ID=Lus10025511.BGIv1.0 annot-version=v1.0 MASKDDSIISNTISSSTLERTFAHQFLTSLKKLRTNNPPNTRTTRRRRRSVRIKLAANSSMARAVGSRRVWSRALLSRNIRTRGRPINTPHSRRKKSPRS RVEKLRKLVPGGTSMGMGKLLEETGHYVQCLAVQVRVMQTIADHYSGLSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	0	1
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	1.0	0.9285
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10031640 [exp]	1.7	0.9093
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	3.2	0.9104
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	4.9	0.8925
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10024323 [exp]	5.8	0.8758
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	7.4	0.8936
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	8.5	0.8753
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	8.9	0.8847
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	9.4	0.9011
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10027548 [exp]	9.7	0.8265

Compare expression of checked genes

Lus10025511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.