Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 514 / 5e-171 S-locus lectin protein kinase family protein (.1) AT1G11410 498 / 2e-165 S-locus lectin protein kinase family protein (.1) AT4G21380 468 / 8e-154 ARK3 receptor kinase 3 (.1) AT1G65800 457 / 1e-149 ARK2 receptor kinase 2 (.1) AT1G65790 446 / 2e-145 ARK1 receptor kinase 1 (.1) AT4G27290 443 / 5e-145 S-locus lectin protein kinase family protein (.1) AT1G11330 426 / 7e-138 S-locus lectin protein kinase family protein (.1.2) AT4G21390 420 / 2e-135 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 407 / 1e-130 S-locus lectin protein kinase family protein (.1) AT1G11350 406 / 2e-130 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034637 [exp] 1123 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 1112 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 1099 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 1096 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 1092 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030767 [exp] 1090 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 1019 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 758 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013247 [exp] 754 / 0 AT1G11340 402 / 4e-131 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 665 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 650 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 615 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 613 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 608 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 601 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 558 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 557 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 546 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 535 / 1e-179 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10025512 pacid=23144999 polypeptide=Lus10025512 locus=Lus10025512.g ID=Lus10025512.BGIv1.0 annot-version=v1.0 ATGGATGCACCACGGCTAATTCTGCTTCCTCTTCTTCTCAGTCTTCTCTTCCATGGTAAAGCCTCTGCATCATCAAATGAAAGCACTATACATGCTAACA GATCAATCAATGATGGCGAGCTTATCATCTCCAAAGCTGGCAACTTTGCTCTTGGGTTTTTCAGCCCTGGCACCTCAACCTACAGAAGATACCTTGGTAT CTGGTGTCATAACAAGCCAGGCCAAACTGTGGTGTGGGTAGCTAACAGGAACGCCCCCATCAACGGCACTTCAGGCATCCTCACCCATGACGGATCTGGA AACCTTTTGCTCTACAGCAGCAGCACCCGAATTAACCAAGAGCTAAATATTCCCATATGGTCTACACACGTTTCCACAACTTTTCCCTCTTCAGCTCAGC TATTGGATTCAGGAAATCTAGTATTGGTCCAACAAGGTACAGAAAATACATCACTACATGTTGTGTGGCAAAGCTTTGATCATCCCACCGATACCTTGTT ACCAGGTATGAAACTGGGCATGAATCTAGATACAGGTTTGAACATGTTCCTGACATCTTGGAGATCAAGAGATGATCCAGGGACTGGAGATTTCTCGTTT AAGCTCAACCCGAATGGTGCGCCTCAGTTCTTTCTGTATTATCAGGGTACAATTCCCCGTTGGCGGAGTCTCCCATGGCCATGGAAAGTAGAACATCGCT ATTACACTGATTCTTTTGTTAACAATGAAGATGGGATATGGTACTCGTTCGCTCCTCATGTTGCTTTGAATGTGCTGAGGCTTGTGATCGACAATTTGGG AACGGTGAAGGGAGTAATGTGGGACGAAGCTAGTGGTATGTGGAAAGAGTTGTATGCGATTTTGCAACAGAAGTGTGACATATACGGTCATTGTGGTGCT TATGGAAGGTGTGACCCTATCTCCTCTTTTCTTTCGGAATGCATGTGCTTACCCGGTTATGAACCAAAGTCCCAAAGCAAGGTGCTTTTCGGAGATGGAA ATGGCGGGTGTGTCAGGAAGCGATCGGAATCCTCACTTTGTGGGAAGGGAGAAGGTTTTGTGAGGGTTAGAAATGTGAAGATTCCAGATGCATCAGAAGC AGTTTGGGTGGACCAGGGGTTGAACAAAGTCAACTGTGAAGATGAGTGTAGAAAGAATTGCTCATGCAGTGCATATACTACTGTTAATATTGTTGGGAAA GGGACTGGTTGTTTGGCTTGGCATGGAGAGCTGATGGATACAGTACACTTCCCGGTACCTGATCAAGAAATCTATGTTCGTGTCGATGCTCTAGAACTAG CTGAGTATGCAGTGCAATCTGGTGAATTTGATGAGCTTCATTTTAAGCTAAGTGTTCTCCTTCCATCAGTTTCTTCGGTTTGGATAGTGTGCATCTTGGT TGCCTACACACTGTTCAAAAGGTGGAGAAAATGGAAAGCAAGGAAAGAAACAGAAAGGCGGATCAGAAACTTGTTTCGTCCGAGCGAGGAATCGAGTTAC TTGCAGGATTCTATGGTCTCAAAGGAAATGGATAGAAGTAAAGTCTACCCAGAGTTGCCGTTTTTCAGCCTCGACGTGATACGTGCTGCAACCAACAACT TTTCAGATGATAACAAACTTGGAAAAGGGGGTTTTGGTTCTGTGTACAAGGGAAAATTTCCATCCGGAGAAGAGATTGCTGTGAAAAGACCGTCAAGAAA TTCAAGGCAGGGACTAGAACAGTTCAAAAGTGAAGTGTTCTTGATTTCGAAATTGCAGCATAGGAACCTTGTAAAGCTTTATGGATGCTGCATTGAGGAA GAAGAGCAGATGTTGATTTATGAATACTTACCTTATAAGAGTTTGGATTCACTTCTTTTGGGTAACCCCAACCTCAGGCTTCTTACTGACTTGGATTTGA TGTTGACACTACTTAATTACATCCTAACAATTTTTGTTAATCATGTAGTTGCGCATCAACGCGGTAGTAAGCCATTCTTAGACTGGCGAAAACGGTTTAA TATCATAGTTGGCATTGCACGTGGGATCTTGTATCTTCATCAAGACTCGAGATTCAGAATAATCCACAGAGATTTGAAAACAAGCAATGTTCTCTTGGAT GCGGAGATTAACCCCAAAATATCTGATTTTGGAATGGCTAGAGTATTAGAGGGGGACGAAGTTGAAGGGGTGACTAGTAGAATTGGTGGAACTTAG
AA sequence Show only first row Show all	>Lus10025512 pacid=23144999 polypeptide=Lus10025512 locus=Lus10025512.g ID=Lus10025512.BGIv1.0 annot-version=v1.0 MDAPRLILLPLLLSLLFHGKASASSNESTIHANRSINDGELIISKAGNFALGFFSPGTSTYRRYLGIWCHNKPGQTVVWVANRNAPINGTSGILTHDGSG NLLLYSSSTRINQELNIPIWSTHVSTTFPSSAQLLDSGNLVLVQQGTENTSLHVVWQSFDHPTDTLLPGMKLGMNLDTGLNMFLTSWRSRDDPGTGDFSF KLNPNGAPQFFLYYQGTIPRWRSLPWPWKVEHRYYTDSFVNNEDGIWYSFAPHVALNVLRLVIDNLGTVKGVMWDEASGMWKELYAILQQKCDIYGHCGA YGRCDPISSFLSECMCLPGYEPKSQSKVLFGDGNGGCVRKRSESSLCGKGEGFVRVRNVKIPDASEAVWVDQGLNKVNCEDECRKNCSCSAYTTVNIVGK GTGCLAWHGELMDTVHFPVPDQEIYVRVDALELAEYAVQSGEFDELHFKLSVLLPSVSSVWIVCILVAYTLFKRWRKWKARKETERRIRNLFRPSEESSY LQDSMVSKEMDRSKVYPELPFFSLDVIRAATNNFSDDNKLGKGGFGSVYKGKFPSGEEIAVKRPSRNSRQGLEQFKSEVFLISKLQHRNLVKLYGCCIEE EEQMLIYEYLPYKSLDSLLLGNPNLRLLTDLDLMLTLLNYILTIFVNHVVAHQRGSKPFLDWRKRFNIIVGIARGILYLHQDSRFRIIHRDLKTSNVLLD AEINPKISDFGMARVLEGDEVEGVTSRIGGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	0	1
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	4.0	0.9096
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	6.0	0.9072
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	6.2	0.9148
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	6.5	0.9139
AT3G04660			F-box and associated interacti...		Lus10007285 [exp]	8.1	0.9088
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10026327 [exp]	9.7	0.8579
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	10.1	0.9103
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	17.7	0.8952
					Lus10027011 [exp]	19.7	0.8628
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	20.7	0.8605

Compare expression of checked genes

Lus10025512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.