Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12890 337 / 2e-110 UDP-Glycosyltransferase superfamily protein (.1) AT2G36780 248 / 8e-76 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 236 / 1e-71 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 231 / 2e-69 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36750 229 / 4e-69 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36760 226 / 7e-68 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT4G34131 225 / 2e-67 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 223 / 1e-66 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15480 220 / 2e-65 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36790 219 / 3e-65 UGT73C6 UDP-glucosyl transferase 73C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031819 [exp] 375 / 2e-125 AT5G12890 506 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10031248 [exp] 370 / 2e-123 AT5G12890 512 / 2e-179 UDP-Glycosyltransferase superfamily protein (.1) Lus10014086 [exp] 245 / 1e-74 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10025514 [exp] 225 / 3e-71 AT5G12890 111 / 6e-29 UDP-Glycosyltransferase superfamily protein (.1) Lus10019832 [exp] 233 / 5e-70 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 231 / 1e-69 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014437 [exp] 230 / 5e-69 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10019831 [exp] 227 / 3e-68 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10016268 [exp] 227 / 7e-68 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077500 [exp] 554 / 0 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077800 [exp] 554 / 0 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 551 / 0 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077700 [exp] 505 / 1e-176 AT5G12890 332 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016300 [exp] 409 / 3e-138 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 390 / 3e-131 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016500 [exp] 388 / 3e-130 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G302400 [exp] 261 / 4e-81 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 258 / 9e-80 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 250 / 5e-77 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10025513 pacid=23145036 polypeptide=Lus10025513 locus=Lus10025513.g ID=Lus10025513.BGIv1.0 annot-version=v1.0 ATGGATCGCCGGAATAATTATAGCGACCATATACTGATGCTGCCGTTCATGGCACACGGCCACCTTATCCCTTTCCTCTCCCTAGCCCAAAACATCCACC GCCGCCGGCCAGAAATCACCATTACCATAGCCGCCACCCCACTCAACATCCAATACCTCCGATCAAGCCTCGCCGGCTCAAACAACAACAACAACAACAT CCGCCTTCACGACCTCCCTTTATCCCCCGCTGCCGCCGAACAGTACGGCCTTCCGCCGGGAGCCGAAAACACAGAGAATCTCCCGCTCGACATGATGATC AATCTCTTTCTCGCCTCCACCACCCTGGAATCCCCCGTCAACGACCTCCTGGTCAAAATCACGGCGGAGGAAGGCGGCCGCCCTCCTCTCTGCGTCATCT CCGACGTCTTCTTCGGCTGGGCCAACGACGTCGCTAAGGCTAACAATACCCCCAATCTCACTTTCACCACCGGCGGAGCTTACGGCACTCTGGCTTACAT TTCTATCTGGCTGAATCGGCCTCACAAACGAGCAGATGGACAAGAAGAAGAAGAATACTTCGACGTCCCAGGATTCGGAGACGGCCGGAGATTCCACATC ACCCAATTGCATCAGTTCTTGAGAAAATCCGACGGGACCGACTCCTGGTCAAAATTCTTCCAGATCCAGCTCTGCAAATCCCTAAATTCTCACGGCTGGC TCTGCAATTCGGTGGAGGAAATCGAGCCTCTCGGATTCGAGCTCCTCCGGAAGTATACAAATCGACAGATATGGGGAATCGGCCCTCTTCTACCCCCGCA ATTTCTCCTCGGTTCATCTTCTTCATCTTCGAGAAGAACCACCGCGAAAACCCACGGCGTATCGCCGGAGAAATGCTTGGAGTGGCTTCAATTGCACGAA CCAGGTTCAGTATTATACATCTCGTTCGGTTCGCAGAACAGCATCAACCCAACCCAAATGATGGAGCTAGCCATCGGGCTAGAGCAGAGCTCGGTACGGG CATTCGTGTGGGTGATACGGCCGCCGATCGGGTTCGACAAAAAATCAGAGTTCCGGCCCGAATGGCTGCCGGAAGGTTTTGAACAAAGAGTGACCGAATC GAAACGAGGGTTACTGGTTCGGAACTGGGCGCCGCAGCTGGAGATTCTTTCCCACGAATCGGTGGGCGGGTTTCTGAGCCATTGCGGGTGGAACTCGGTT TTGGAGAGCTTGAGCCAGGGGGTTCCGATCATAGGGTGGCCGCTGGCGGCGGAGCAGGCGTTTAATTCGAAGATGCTGGTGGAGGAGATGGGGGTTGCTG TGGAATTGGCGAGAGGTGGGGTGGGGGGTTTGGATAGGGAGGATGTGAAGAGAGTGGTTGAGATTGTGATGGTAAATGGAGAGGAAATGAAGAGGAGAGC TGTGGTGGCGTCGGAGGAACTGAAGGCGTCGGTTAGAGATGATGGAGACGGGAAGAAGAAGGGTTCTTCTGCTAAGGCTATGGATGGTTTTTTGGCTGAT GTTCTTCTTGCCGATCGGCGGCCGGTTGCTGTAGAAAGAGTGGAATTGAAACATGGAAGTGAATTTTGA
AA sequence Show only first row Show all	>Lus10025513 pacid=23145036 polypeptide=Lus10025513 locus=Lus10025513.g ID=Lus10025513.BGIv1.0 annot-version=v1.0 MDRRNNYSDHILMLPFMAHGHLIPFLSLAQNIHRRRPEITITIAATPLNIQYLRSSLAGSNNNNNNIRLHDLPLSPAAAEQYGLPPGAENTENLPLDMMI NLFLASTTLESPVNDLLVKITAEEGGRPPLCVISDVFFGWANDVAKANNTPNLTFTTGGAYGTLAYISIWLNRPHKRADGQEEEEYFDVPGFGDGRRFHI TQLHQFLRKSDGTDSWSKFFQIQLCKSLNSHGWLCNSVEEIEPLGFELLRKYTNRQIWGIGPLLPPQFLLGSSSSSSRRTTAKTHGVSPEKCLEWLQLHE PGSVLYISFGSQNSINPTQMMELAIGLEQSSVRAFVWVIRPPIGFDKKSEFRPEWLPEGFEQRVTESKRGLLVRNWAPQLEILSHESVGGFLSHCGWNSV LESLSQGVPIIGWPLAAEQAFNSKMLVEEMGVAVELARGGVGGLDREDVKRVVEIVMVNGEEMKRRAVVASEELKASVRDDGDGKKKGSSAKAMDGFLAD VLLADRRPVAVERVELKHGSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025513 [exp]	0	1
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	2.4	0.7780
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034083 [exp]	3.2	0.7476
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	7.5	0.7352
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	8.7	0.7416
					Lus10009611 [exp]	21.9	0.6705
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	27.5	0.7111
AT5G13030			unknown protein		Lus10031224 [exp]	29.2	0.6953
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10011738 [exp]	31.4	0.6853
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10020656 [exp]	31.6	0.7324
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	32.9	0.7308

Compare expression of checked genes

Lus10025513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.