Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12890 111 / 5e-29 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 69 / 5e-14 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 66 / 9e-13 UDP-Glycosyltransferase superfamily protein (.1) AT2G36780 64 / 3e-12 UDP-Glycosyltransferase superfamily protein (.1) AT2G36790 64 / 5e-12 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT4G34135 61 / 3e-11 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G36800 60 / 8e-11 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G15480 59 / 2e-10 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 59 / 2e-10 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT1G73880 58 / 3e-10 UGT89B1 UDP-glucosyl transferase 89B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025513 [exp] 226 / 7e-72 AT5G12890 348 / 9e-115 UDP-Glycosyltransferase superfamily protein (.1) Lus10031819 [exp] 112 / 3e-29 AT5G12890 506 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10031248 [exp] 106 / 4e-27 AT5G12890 512 / 2e-179 UDP-Glycosyltransferase superfamily protein (.1) Lus10014079 [exp] 73 / 2e-15 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10010239 [exp] 69 / 1e-13 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2) Lus10034650 [exp] 67 / 4e-13 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10021718 [exp] 66 / 8e-13 AT1G73880 314 / 8e-105 UDP-glucosyl transferase 89B1 (.1) Lus10007972 [exp] 62 / 2e-11 AT1G73880 355 / 1e-119 UDP-glucosyl transferase 89B1 (.1) Lus10003322 [exp] 62 / 3e-11 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077800 [exp] 198 / 2e-61 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 192 / 2e-59 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077500 [exp] 191 / 1e-58 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077700 [exp] 184 / 2e-56 AT5G12890 332 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016300 [exp] 132 / 1e-36 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016500 [exp] 125 / 3e-34 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 120 / 3e-32 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G099032 [exp] 78 / 4e-17 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 78 / 5e-17 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 76 / 2e-16 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025514 pacid=23144949 polypeptide=Lus10025514 locus=Lus10025514.g ID=Lus10025514.BGIv1.0 annot-version=v1.0 ATGCGTCTCCACCTCTACAACGCTTCCACCGCCCTCCAATGCCCCGTCCGCGACCTCGTCGCCGAGATCACCGCCAGAGACGGCGGCCGGCTTCCGTCCT GCATAATCTCCGACGTGTTCTTCGGGTGGGCGACGGAGGTCGCGGCGGGGTTCGGAATAAGGAATTTCACCTTCTCGACCTGCGGCGCGTACGGGTCTTT GGGATATATGTCTGTTTGGATGAATCTTCCTCACCGGAGAGCGGTGGAGTGTGGCGGCGGCGAGGAGGCAGAGTTCGAGGTGCCGGGGTTTCCTGAAGGG TACCGATTTCAGCTGAGTCAGTTGCACAAGATTTATAGAGATGCTGATGGTAGAGACGGTTGGTCGAAGTTCTTCCGGAAGCAGATTGCCGGGTCGATGA ATTCCGATGGATGGCTGTGTAATTCTGTGGAGGAAGTTGAGCCTCTTGGGTTTGAGCTTTTGAGGAAATTTGTGAAGCGCCAGATTTGGGCGATTGGTCC TCTGCTTCCGCCGGAGATTTCTGGTCAATCGACCACCAAATCAAGAGTTTAA
AA sequence Show only first row Show all	>Lus10025514 pacid=23144949 polypeptide=Lus10025514 locus=Lus10025514.g ID=Lus10025514.BGIv1.0 annot-version=v1.0 MRLHLYNASTALQCPVRDLVAEITARDGGRLPSCIISDVFFGWATEVAAGFGIRNFTFSTCGAYGSLGYMSVWMNLPHRRAVECGGGEEAEFEVPGFPEG YRFQLSQLHKIYRDADGRDGWSKFFRKQIAGSMNSDGWLCNSVEEVEPLGFELLRKFVKRQIWAIGPLLPPEISGQSTTKSRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	0	1
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025515 [exp]	1.0	0.9818
					Lus10024679 [exp]	4.2	0.7722
AT2G15220			Plant basic secretory protein ...		Lus10019805 [exp]	4.5	0.7443
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	11.3	0.8335
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	16.9	0.7599
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	21.6	0.8063
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10018143 [exp]	31.5	0.7563
AT4G39830			Cupredoxin superfamily protein...		Lus10037103 [exp]	31.6	0.7115
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019911 [exp]	40.6	0.7239
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	42.4	0.7560

Compare expression of checked genes

Lus10025514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.