Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12890 99 / 1e-24 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 87 / 1e-20 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 84 / 9e-20 UDP-Glycosyltransferase superfamily protein (.1) AT4G01070 85 / 1e-19 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT5G03490 82 / 6e-19 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 82 / 9e-19 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G10400 81 / 2e-18 UDP-Glycosyltransferase superfamily protein (.1) AT2G29710 81 / 2e-18 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 80 / 4e-18 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT2G29730 80 / 4e-18 UGT71D1 UDP-glucosyl transferase 71D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025513 [exp] 146 / 7e-42 AT5G12890 348 / 9e-115 UDP-Glycosyltransferase superfamily protein (.1) Lus10031819 [exp] 108 / 5e-28 AT5G12890 506 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10031248 [exp] 105 / 6e-27 AT5G12890 512 / 2e-179 UDP-Glycosyltransferase superfamily protein (.1) Lus10010476 [exp] 87 / 2e-20 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 86 / 8e-20 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10022221 [exp] 83 / 5e-19 AT2G16890 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022222 [exp] 82 / 1e-18 AT5G14860 505 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10001906 [exp] 82 / 2e-18 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 81 / 2e-18 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077500 [exp] 139 / 2e-39 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 134 / 2e-37 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077800 [exp] 134 / 2e-37 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077700 [exp] 121 / 5e-33 AT5G12890 332 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 109 / 1e-28 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016300 [exp] 108 / 2e-28 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016500 [exp] 95 / 3e-23 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G041800 [exp] 79 / 7e-18 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.018G009000 [exp] 79 / 9e-18 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.007G030400 [exp] 79 / 1e-17 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10025515 pacid=23145063 polypeptide=Lus10025515 locus=Lus10025515.g ID=Lus10025515.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGAAGGGTTCGAGCATCGAGTCCAACAATCCAAAACAGGACTACTGGTCCGGAACTGGGCCCCACAGTTGGAGATCCTGTCCCACAAGTCA ACGAGAGCGTTCTGAGCCACTGCGGCTGGAACTCCGTACTAGAGAGCTTGAGCCAGGGGGTTCCCATCATCGCTTGGCCATTGGCGGCCGAGCAAGGTTT CAATGCAAAGATGGTCAAGGAGGAGATCGGAGCAGCTGTGGAACTTTCGAGAGGAACGGAGAGTGTTCTTGAGAGAACTGAGGTTAAGAGAGTGATTGAG TTTGTGATGGGGGAAGAAGGGGATGAATTGAAGAGGAAAGTTGAGGACGTTGCTCGGCATTTGCGGGCTTCGGTTCGAGATGAAGGGAATGATGATAAGA AAGGTTCTTCTGTGAAAGCTATGGATGATTTCCTGCAAACAGTTCTGAGCAATCGAGCCCCAACAGAGTGA
AA sequence Show only first row Show all	>Lus10025515 pacid=23145063 polypeptide=Lus10025515 locus=Lus10025515.g ID=Lus10025515.BGIv1.0 annot-version=v1.0 MAAGRVRASSPTIQNRTTGPELGPTVGDPVPQVNESVLSHCGWNSVLESLSQGVPIIAWPLAAEQGFNAKMVKEEIGAAVELSRGTESVLERTEVKRVIE FVMGEEGDELKRKVEDVARHLRASVRDEGNDDKKGSSVKAMDDFLQTVLSNRAPTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025515 [exp]	0	1
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	1.0	0.9818
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	7.1	0.8582
					Lus10024679 [exp]	25.0	0.7489
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019911 [exp]	27.7	0.7451
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10019729 [exp]	36.1	0.7898
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10018143 [exp]	55.5	0.7614
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	73.8	0.7853
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	83.6	0.7193
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10040312 [exp]	87.9	0.7520
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	132.5	0.7386

Compare expression of checked genes

Lus10025515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.