Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31680 382 / 1e-136 AtRABA5d RAB GTPase homolog A5D (.1) AT1G05810 375 / 2e-133 ARA, Ara-1, AtRab11D, AtRABA5e ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) AT2G43130 363 / 2e-129 ARA4, AtRab11F, AtRABA5c, Ara-4 ARABIDOPSIS RAB GTPASE HOMOLOG A5C, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G07410 348 / 2e-123 AtRABA5b RAB GTPase homolog A5B (.1) AT5G47520 283 / 8e-98 AtRABA5a RAB GTPase homolog A5A (.1) AT1G09630 248 / 8e-84 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT4G18430 248 / 1e-83 AtRABA1e RAB GTPase homolog A1E (.1) AT1G16920 246 / 3e-83 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G07410 245 / 7e-83 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G06400 244 / 2e-82 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026731 [exp] 444 / 5e-161 AT2G31680 381 / 2e-136 RAB GTPase homolog A5D (.1) Lus10038226 [exp] 318 / 4e-111 AT1G05810 333 / 3e-117 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Lus10025876 [exp] 317 / 7e-111 AT1G05810 331 / 1e-116 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Lus10038807 [exp] 281 / 9e-97 AT5G47520 376 / 2e-134 RAB GTPase homolog A5A (.1) Lus10000536 [exp] 281 / 1e-96 AT5G47520 369 / 3e-131 RAB GTPase homolog A5A (.1) Lus10017558 [exp] 280 / 4e-96 AT5G47520 367 / 1e-130 RAB GTPase homolog A5A (.1) Lus10012032 [exp] 247 / 2e-83 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10016284 [exp] 244 / 2e-82 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10000637 [exp] 244 / 6e-82 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231800 [exp] 395 / 4e-142 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.014G150300 [exp] 390 / 8e-140 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.002G249500 [exp] 337 / 6e-119 AT1G05810 333 / 8e-117 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Potri.006G015400 [exp] 278 / 1e-95 AT5G47520 398 / 5e-143 RAB GTPase homolog A5A (.1) Potri.016G010300 [exp] 278 / 1e-95 AT5G47520 395 / 7e-142 RAB GTPase homolog A5A (.1) Potri.003G004100 [exp] 252 / 2e-85 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.011G070300 [exp] 245 / 8e-83 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 245 / 1e-82 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.001G374000 [exp] 243 / 5e-82 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.006G000300 [exp] 243 / 8e-82 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10025516 pacid=23145080 polypeptide=Lus10025516 locus=Lus10025516.g ID=Lus10025516.BGIv1.0 annot-version=v1.0 ATGTCATCATCAGACGACGAGGGAGGAGAGGAGTACCTGTTCAAGATCGTGATAATCGGCGACTCTGCTGTCGGCAAATCCAACCTCTTATCCCGCTACT CCCGAAACGAGTTCAACGCCCACTCCAAGGCCACCATAGGCGTCGAGTTCCAGACGCAGAGCATGGAGATCGACGGGAAGGAAGTCAAGGCCCAGATTTG GGATACCGCCGGACAGGAGAGGTTCCGCGCCGTCACCTCTGCTTACTACAGAGGAGCCGTCGGCGCTCTCATCGTTTACGACATCAGCCGCCGCACCACC TTCGAGAGCGTCGGCCGCTGGCTCGATGAGCTCACCACGCATTCGGACACGACGGTAGCAAGAATGCTGGTCGGCAACAAGTGCGATCTCGAAAACATTC GAGCGGTGAGCGTCGAGGAAGGGAAAAGCCTTGCAGAACAAGAAGGGTTGTTCTTCATGGAGACTTCCGCCCTTGATTCAACCAATGTCAAGAAGGCCTT TGAGCTTGTGATTCGAGAAATTTACAGCAACGTGAGCCGGAAAGTCCTCAACTCCGATGCATACAAGGCCGAGTTGTCCTTAAACAGGGTGACCCTTTCC AATGACGACGGATCGAAAAAGTCGAGTGGGTTCATGTCCTGCTGCTCCAGGTCATGA
AA sequence Show only first row Show all	>Lus10025516 pacid=23145080 polypeptide=Lus10025516 locus=Lus10025516.g ID=Lus10025516.BGIv1.0 annot-version=v1.0 MSSSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYSRNEFNAHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRTT FESVGRWLDELTTHSDTTVARMLVGNKCDLENIRAVSVEEGKSLAEQEGLFFMETSALDSTNVKKAFELVIREIYSNVSRKVLNSDAYKAELSLNRVTLS NDDGSKKSSGFMSCCSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	0	1
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	1.0	0.9177
AT1G69430			unknown protein		Lus10036796 [exp]	4.9	0.8752
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	6.2	0.8621
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033583 [exp]	8.0	0.8217
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	8.1	0.8048
AT3G49720			unknown protein		Lus10039648 [exp]	9.2	0.8283
AT1G31780			unknown protein		Lus10037280 [exp]	11.5	0.8354
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	11.7	0.8010
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10030288 [exp]	12.2	0.7714
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	12.6	0.8306

Compare expression of checked genes

Lus10025516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.