Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05805 229 / 2e-72 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 187 / 6e-57 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G42280 139 / 1e-37 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G35460 125 / 2e-33 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51140 127 / 4e-33 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 121 / 5e-32 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G25330 68 / 6e-13 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G58010 67 / 2e-12 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 67 / 3e-12 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT4G34530 67 / 4e-12 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026733 [exp] 236 / 9e-78 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031255 [exp] 130 / 3e-36 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031826 [exp] 130 / 9e-35 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015704 [exp] 129 / 1e-33 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037484 [exp] 127 / 4e-33 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021023 [exp] 123 / 9e-31 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 95 / 1e-21 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021846 [exp] 67 / 5e-12 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10023562 [exp] 64 / 3e-11 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150600 [exp] 318 / 2e-107 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G231700 [exp] 308 / 2e-103 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G064700 [exp] 161 / 1e-45 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G050500 [exp] 157 / 6e-45 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057600 [exp] 145 / 1e-40 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G207200 [exp] 145 / 1e-39 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 141 / 3e-38 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 139 / 2e-37 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 122 / 1e-32 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 122 / 3e-32 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025518 pacid=23145020 polypeptide=Lus10025518 locus=Lus10025518.g ID=Lus10025518.BGIv1.0 annot-version=v1.0 ATGTACCCTCCACCTCCTCCGCCGCCGGCGTCGACTTCCTCTTCCTCCTCCCCGCAAAAACCGGCTCTCCAGAGCAGCTCTGGATTGGCCCGCTACTGCT CTGCCCCGGGATCATTCCTCACCAGGGCGGTGGATTCCGTCATCGGATCCGTCGACGACCGCCACTTCTCCTCCGCCGTTGACAGGTACTTCTCCAGCGG CGGCGAATCCGACTTCTCTTCTTCGCAGCTGACGTCGGAGTCTACTTGCAGACTCAACTCTTCTTCCTCCGCCGCCGCGCAGGAAGGCGGCGATCAGCTG AAGAGATCCGGCGAGCTGAATGCTATAGCGCGTGGCGCCGCCGCCGCTGCCACGTCGACATCCTCTGGATTTCTGCTGCGGCAGAAGAGCTCGCCGGCTG GATTTCTGACGAATCTCGTCTCCGAAAGTGGTTTTACGATAACGAGGGGTAATTCAGGAAACGGCGGATATCCAGCACAAGGGTTGAAATCGCAGCTGAG CTTCACCGGGCAGGAATCACTTTCTCACATATCGGAGGGCAGCGAAAGCGACGTCGTGGAGGCTGATCAGAATGGTCGCCACAACAACAATAATAGTTCT GGTTATCATCATCATCCTCCCTCTGGCTTTGTGATGGACACTTGGGACAATAGCAACAACTCCAATTCAATCACCTTCTCATCCTCCGGAGGACAATCGA ACAACAAGCGATATCGAAATATGGACGGAGAGTTTTATACTTCCTACAATGGCTTGGAAACCCAGTTTAGTATGCCACAGACGACTCTGGAGATGGCAGC GGTGGACAAGATGTTACAGATACCTGAAGACTCTGTTCCGTGCAAAGTTCGAGCTAAGCGAGGATGCGCTACTCACCCGCGAAGCATTGCTGAAAGGGAA AGACGAACGAGAATAAGCGGGAGATTGAAGAAACTTCAAGATCTTGTTCCCAATATGGATAAGCAAACGAGCTATTCAGACATGTTGGATTTGGCAGTTC AGCACATCAAAGGTCTCCAAAATGAACTTGAGAAGCTTCATCAGGATATGGATAATTGTACCTGTGGATGCCGCCCATCCAAATGA
AA sequence Show only first row Show all	>Lus10025518 pacid=23145020 polypeptide=Lus10025518 locus=Lus10025518.g ID=Lus10025518.BGIv1.0 annot-version=v1.0 MYPPPPPPPASTSSSSSPQKPALQSSSGLARYCSAPGSFLTRAVDSVIGSVDDRHFSSAVDRYFSSGGESDFSSSQLTSESTCRLNSSSSAAAQEGGDQL KRSGELNAIARGAAAAATSTSSGFLLRQKSSPAGFLTNLVSESGFTITRGNSGNGGYPAQGLKSQLSFTGQESLSHISEGSESDVVEADQNGRHNNNNSS GYHHHPPSGFVMDTWDNSNNSNSITFSSSGGQSNNKRYRNMDGEFYTSYNGLETQFSMPQTTLEMAAVDKMLQIPEDSVPCKVRAKRGCATHPRSIAERE RRTRISGRLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNELEKLHQDMDNCTCGCRPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	0	1
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10040224 [exp]	2.4	0.7912
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	3.7	0.7983
AT5G47040		LON2	lon protease 2 (.1)		Lus10003009 [exp]	5.9	0.7840
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	6.1	0.8142
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	8.0	0.7864
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	8.1	0.7803
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	12.6	0.7587
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	13.1	0.7556
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	15.1	0.7285
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	15.2	0.7504

Compare expression of checked genes

Lus10025518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.