Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31690 459 / 1e-158 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 455 / 4e-157 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 288 / 2e-92 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 287 / 1e-91 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 273 / 2e-85 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 246 / 3e-75 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 208 / 1e-62 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 193 / 3e-55 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 186 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 168 / 5e-47 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026735 [exp] 847 / 0 AT2G31690 472 / 1e-163 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 218 / 2e-65 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 213 / 3e-62 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 209 / 4e-62 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 203 / 7e-60 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10041165 [exp] 199 / 1e-58 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 195 / 9e-56 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 191 / 2e-55 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 192 / 4e-55 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231600 [exp] 538 / 0 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 529 / 0 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 303 / 4e-97 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 298 / 1e-95 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 283 / 1e-89 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 228 / 2e-68 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 227 / 4e-68 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 213 / 2e-63 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 207 / 2e-61 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047900 [exp] 204 / 3e-60 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10025519 pacid=23144966 polypeptide=Lus10025519 locus=Lus10025519.g ID=Lus10025519.BGIv1.0 annot-version=v1.0 ATGCCAACCGCTACGAGTCATGTGATCACGAGCGTGGGTGATGATCGTCGCATGGGGTTCGACGTTTTAGAGCCGAGTAAACAAATTTCATACCGGGCCA GACCGTTGCTGGCCCAAAATCTTCACTTAACCAAGAAACCAACTACACGAGAAGTTCCTCTTCGTCATGATGTCATCCCAACATCTCCAACATCTAGCCA TGGAAGCTCATCAATGAAGGAATCATTGGCACAAATGTGGAGGGAGGTACAAGGTTGTTCCAATTGGGAAGGCCTCGTTTCGCCGTTGCATCCTCTTCTT CGACAAGAGCTCGTTCGTTACGGGGAGCTATTGTCGGCTTGCTACAAGGCATTCGACCTCGACCCGAACTCCAGCCGTTACTTGAACTGCAAGTATGGTA AGAAGAGCATGTTCGAGCAACTCGGAATGGAGGATTTTGGGTACGAGGTAACGAAGTACATCTATGCCATTGCACCCAACGTAATGACTAGCATCCCTAT CCAACAGGTCTCTACATGTTGCGGGCGCTGGATAGGGTATGTAGCCGTGGCATCGAATGCCACTGCCAAGAAGCTGGGGAGAAGGGATATACTCGTCACG TTTCGAGGAACTGTGACAAATCAAGAATGGGTAGCTAACCTCATGAGCTCTTTAACTCCAGCCAGGCTGGACCCTTCCGATCCTCGTCCAGATGTACAAG TGGAATCTGGGTTCCTAAGCTTGTACACCTCAGACGAGACGAACAACAAGTTCGGCCTCGAGAGCTGCCGGGAGCAGCTCCTCTCCGAAGTCTCGAGGTT GCTCAAGAAGTACAAAGGAGAGGAGCTCAGCATTTCGTTGGCTGGACACAGCATGGGGAGCTCCCTAGCTCACCTACTCGCCTACGACATCTCAGAGCTT GGGTTGAATAAGGTCAACCCGGGCAAGAGAGACGGTATTGATCACCAACACCACCAACAGGTAGTGCCGGTGACAGTTTTCTCGTATGGCGGACCCCGTG TAGGGAACCCCGGGTTCAAGAGTAGGTGCGAGGAGTTGGGAGTGAAAGTGTTGAGAGTCGTAAATGTGAACGACCCAGTCACAAGGCTTCCCGGGGTTTT CCTCAATGAGGGCTTAAGGGTTTGGGGGAAGCACGAGATGCCCTGGAGTTGCTCGTGCTACTCGCACGTCGGAGTCGAGGTTTCCCTCGACTTCTTTAAC GTGAAGAACCCTTCGTTGGTTCATGACTTGGAAGCATATATTAATAGCCTTCTGAGTTGTACGAGGAAGACGAGAAGTAGAAATGACGACGAGGGTAATG TTGTTGTAAATGTTAGGGATGTTTTCGAGAGGGCAAAAGGGTCTTTTGAGCTGTCTGGCCGGTTAAGGAAAGCGGCGAGTAGTATGGTTAACTTGTTTGT TCAGACGTCCGACCAAGGAGCTGAATTCGTGACCGATGATAATTTCTTAGGACTTATGAATTGCATGGCTTTGTTTATGTTTGTTGGGATCTCGTAG
AA sequence Show only first row Show all	>Lus10025519 pacid=23144966 polypeptide=Lus10025519 locus=Lus10025519.g ID=Lus10025519.BGIv1.0 annot-version=v1.0 MPTATSHVITSVGDDRRMGFDVLEPSKQISYRARPLLAQNLHLTKKPTTREVPLRHDVIPTSPTSSHGSSSMKESLAQMWREVQGCSNWEGLVSPLHPLL RQELVRYGELLSACYKAFDLDPNSSRYLNCKYGKKSMFEQLGMEDFGYEVTKYIYAIAPNVMTSIPIQQVSTCCGRWIGYVAVASNATAKKLGRRDILVT FRGTVTNQEWVANLMSSLTPARLDPSDPRPDVQVESGFLSLYTSDETNNKFGLESCREQLLSEVSRLLKKYKGEELSISLAGHSMGSSLAHLLAYDISEL GLNKVNPGKRDGIDHQHHQQVVPVTVFSYGGPRVGNPGFKSRCEELGVKVLRVVNVNDPVTRLPGVFLNEGLRVWGKHEMPWSCSCYSHVGVEVSLDFFN VKNPSLVHDLEAYINSLLSCTRKTRSRNDDEGNVVVNVRDVFERAKGSFELSGRLRKAASSMVNLFVQTSDQGAEFVTDDNFLGLMNCMALFMFVGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31690			alpha/beta-Hydrolases superfam...		Lus10025519 [exp]	0	1
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	1.0	0.8092
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	5.5	0.7767
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	16.7	0.7132
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	21.0	0.7021
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	24.0	0.7189
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	24.5	0.6925
AT4G37420			Domain of unknown function (DU...		Lus10012255 [exp]	61.6	0.6357
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	67.9	0.6556
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	80.0	0.6187
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	132.3	0.6411

Compare expression of checked genes

Lus10025519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.