Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 64 / 5e-12 HXXXD-type acyl-transferase family protein (.1) AT4G15390 52 / 6e-08 HXXXD-type acyl-transferase family protein (.1) AT5G47980 50 / 3e-07 HXXXD-type acyl-transferase family protein (.1) AT5G23970 47 / 2e-06 HXXXD-type acyl-transferase family protein (.1) AT1G24430 44 / 2e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000021 [exp] 130 / 4e-39 AT3G26040 56 / 2e-13 HXXXD-type acyl-transferase family protein (.1) Lus10026736 [exp] 135 / 1e-38 AT3G26040 129 / 7e-34 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 61 / 1e-10 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 52 / 1e-07 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 50 / 3e-07 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 50 / 3e-07 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10036868 [exp] 49 / 7e-07 AT3G26040 146 / 4e-41 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 47 / 3e-06 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10032497 [exp] 44 / 6e-06 AT4G15390 62 / 2e-12 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250500 [exp] 71 / 4e-14 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 69 / 8e-14 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 68 / 3e-13 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 67 / 5e-13 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 66 / 1e-12 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 65 / 3e-12 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 64 / 7e-12 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 57 / 1e-09 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.019G001400 [exp] 57 / 1e-09 AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 54 / 2e-08 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10025520 pacid=23145092 polypeptide=Lus10025520 locus=Lus10025520.g ID=Lus10025520.BGIv1.0 annot-version=v1.0 ATGGTGACGTGGCTGCAAGATGCCACGTCAGACCTTCTTCCCCAACACCTCCAAATCTCAAGACCTACAACCTCAGCGGCGTTGACCAAATCAACCCGTC CCTCTACGGCCCGTTCATCTTCTACTACCCACCCGACCCGGCCCAACAGCCCGAACCCCGCCGTCCATTCCTCCTCAAACTATCACTGTCCCACATTTTA TCCCCGGTACCCCTTAGCCGGGAGGCTGAGAGACTCCCTATCCGTCGACTGCTGCGACGCCGGAGCCTACTACTCCCAGGCTAAAATCGTCAATTCCACC AACTCATCATCAGTTTCACAATTCCTCCACCGATTCGACCTCGCCAGTATTGTAATCGGGGTGCTGGTCGCTCACGATCTCCTAGATGCTTTCTCGATTG CTTCCTTTCTGAAGGACTGGTCCGCCATTGCTCGACGGCTGCAAAATCCGGACGCCGCGGATTTTGTCGGGATTCCAAAGTTCGTCGGTGGTGCCATATT TCCGCAGAACGAAGCGTTGTTTGAGAGATTGGTCGATCCAAGGCCGCCGTCAACGGAGACTCCGGCGACGACGAAGACGGTGGCCAGGAAGAAAAGTGTG ATCAGTACTTGA
AA sequence Show only first row Show all	>Lus10025520 pacid=23145092 polypeptide=Lus10025520 locus=Lus10025520.g ID=Lus10025520.BGIv1.0 annot-version=v1.0 MVTWLQDATSDLLPQHLQISRPTTSAALTKSTRPSTARSSSTTHPTRPNSPNPAVHSSSNYHCPTFYPRYPLAGRLRDSLSVDCCDAGAYYSQAKIVNST NSSSVSQFLHRFDLASIVIGVLVAHDLLDAFSIASFLKDWSAIARRLQNPDAADFVGIPKFVGGAIFPQNEALFERLVDPRPPSTETPATTKTVARKKSV IST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	2.2	0.7987
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	22.4	0.8017
AT4G35680			Arabidopsis protein of unknown...		Lus10041833 [exp]	23.5	0.7782
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	29.1	0.8010
AT5G27660			Trypsin family protein with PD...		Lus10037815 [exp]	39.3	0.7428
AT2G17080			Arabidopsis protein of unknown...		Lus10023957 [exp]	43.3	0.7866
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10038415 [exp]	54.0	0.7472
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10001894 [exp]	55.6	0.7700
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10030880 [exp]	69.1	0.7330
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10034200 [exp]	78.9	0.7432

Compare expression of checked genes

Lus10025520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.