Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 50 / 3e-09 HXXXD-type acyl-transferase family protein (.1) AT1G24420 46 / 7e-08 HXXXD-type acyl-transferase family protein (.1) AT5G47980 44 / 5e-07 HXXXD-type acyl-transferase family protein (.1) AT5G47950 42 / 3e-06 HXXXD-type acyl-transferase family protein (.1) AT3G30280 42 / 3e-06 HXXXD-type acyl-transferase family protein (.1) AT4G15390 41 / 4e-06 HXXXD-type acyl-transferase family protein (.1) AT1G24430 40 / 1e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026736 [exp] 76 / 2e-18 AT3G26040 129 / 7e-34 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 57 / 9e-12 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 49 / 8e-09 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 49 / 1e-08 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10025729 [exp] 45 / 7e-08 AT1G24430 91 / 5e-22 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 46 / 8e-08 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 44 / 4e-07 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 42 / 2e-06 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 42 / 3e-06 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034200 [exp] 49 / 1e-08 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 48 / 2e-08 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 48 / 2e-08 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 48 / 2e-08 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 47 / 2e-08 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 46 / 9e-08 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.019G001200 [exp] 45 / 2e-07 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 44 / 3e-07 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 42 / 2e-06 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.015G127000 [exp] 41 / 4e-06 AT3G26040 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025521 pacid=23145003 polypeptide=Lus10025521 locus=Lus10025521.g ID=Lus10025521.BGIv1.0 annot-version=v1.0 ATGGTGATGATTTTGGATACGAGGGATGGGAGTGGGTTGGAAGCTTGGGTTTTCTTGGAGGAAGATGAGATGGGTGTGTTGGAGAATGATCAGTTGCTTC TCTCTTTTGCTTCTTTGGATCGCCGTGTTGTGCTCTTTTTATGCAACTAA
AA sequence Show only first row Show all	>Lus10025521 pacid=23145003 polypeptide=Lus10025521 locus=Lus10025521.g ID=Lus10025521.BGIv1.0 annot-version=v1.0 MVMILDTRDGSGLEAWVFLEEDEMGVLENDQLLLSFASLDRRVVLFLCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	0	1
AT4G38080			hydroxyproline-rich glycoprote...		Lus10029845 [exp]	2.8	0.7585
AT1G08580			unknown protein		Lus10000388 [exp]	2.8	0.7756
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10024705 [exp]	3.2	0.7423
AT5G05340			Peroxidase superfamily protein...		Lus10030145 [exp]	4.6	0.6784
AT4G37700			unknown protein		Lus10025207 [exp]	5.7	0.7010
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	6.3	0.7595
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002612 [exp]	7.3	0.7589
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	10.0	0.7541
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	11.0	0.7541
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	11.2	0.6936

Compare expression of checked genes

Lus10025521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.