Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 220 / 2e-66 HXXXD-type acyl-transferase family protein (.1) AT5G47950 194 / 9e-57 HXXXD-type acyl-transferase family protein (.1) AT3G30280 192 / 6e-56 HXXXD-type acyl-transferase family protein (.1) AT4G15390 182 / 3e-52 HXXXD-type acyl-transferase family protein (.1) AT1G24420 175 / 2e-49 HXXXD-type acyl-transferase family protein (.1) AT1G24430 164 / 2e-45 HXXXD-type acyl-transferase family protein (.1) AT5G23970 154 / 6e-42 HXXXD-type acyl-transferase family protein (.1) AT5G47980 154 / 1e-41 HXXXD-type acyl-transferase family protein (.1) AT4G15400 138 / 5e-36 HXXXD-type acyl-transferase family protein (.1) AT5G41040 108 / 1e-25 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039330 [exp] 293 / 2e-94 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 257 / 2e-80 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 244 / 2e-75 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10001063 [exp] 209 / 9e-66 AT5G47980 74 / 5e-16 HXXXD-type acyl-transferase family protein (.1) Lus10026736 [exp] 214 / 2e-65 AT3G26040 129 / 7e-34 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 215 / 1e-62 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 193 / 4e-56 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 186 / 2e-53 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 167 / 2e-46 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 244 / 1e-75 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 223 / 1e-67 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 221 / 5e-67 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 219 / 5e-66 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 210 / 2e-62 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 203 / 7e-60 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 202 / 1e-59 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 195 / 4e-57 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 195 / 5e-57 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 190 / 3e-55 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10025522 pacid=23145114 polypeptide=Lus10025522 locus=Lus10025522.g ID=Lus10025522.BGIv1.0 annot-version=v1.0 ATGGAGGTGGAAATAATATCAGAGATGTGCATCAAGCCATCGTCCCCAACACCACCACACCTCAAAACCTACAACTTCAGCAGCATAGATCAACGATCCA CTTCCATCTACGCTCCCATCATTGTCTTCTTCAATACTCACAACTCCATCCAACATACCTCCTCCTCCCTAAAAACCTCCCTCTCCAAAACACTCACCCT CTTCTACCCTCTCGCCGGCAAGACCGCACGAAACGACGCCGCCGTATCCATCGACTGCACCGACGACGGAGTCTACTACGTGGAGGCACGTGTCGTGTCC CCCACCTGCACCCTCTCCCAGTACCTCCGCCACGACGTCGTCAAAGACATGACCACGCTTACAAAGCTCCTCCCTTTATCCGACGCAGTTCGGATGTTCT GCCCCCCGCCTCCTGGGTCCCACCTGGCTCTGTTCCAGGTTACGTTTTTCCCCTGCGGTGGATTGGCCATTGGCTCCATGATGACTCATAAGATTGTCGA CGCGCCTTCGTTTTGTTACTTCTTCCAAGCTTGGGCCGCCGCCGCATCTGGATCTAATCATTGGCCGCCGCCGCTGTTGTCTGCTGAGTCATTGTTCCCT CAGAATCAAGCGTTCCTTGAAACGGCGCCCGTTCCCCAGGCGACTTCGTCGCTCCACGTCAGCCCGCAGTTCGTACGGGCTCAGTCTGTGTCAGGCGCTC TACGGAGGTTTGTGTTCAACGCATCAGCAATAGCGAGGCTAAAGGAGAAATCCAAGTCAACACAGGCCAACACATATCCAAGCCGCGTCCAAGCAGTAAC GGCGTTAATCATCAAGTCCATACTCCGCGCTTTCGAGCTCCGGTCAGACACCGCCGGGAAAACACTAATCGTACAGCCGGTGAATCTACGCACCAGAGCG GCTAACCCACCACTACCGCACAACTTATTCGGCAACTTAACAATGAGAGCATCTTTCCCTCTCCAAGGAGGGAAAACCTCCGAGCTGAGCGAACTGGTGA GCTTAATGAAAGGTTCGGTGTCCAAAATCGACGATGAATTGGTCAGGGAAATACAAGGGGAAGGAGGGAAGGATCGTTTCGTAGAGTTGGCTCGAGAGAT GGACCAAGAAGAAGGGAACGCCGAAAGGCACATCATGTGTAATAGCTTTAGCCGGCTGGGTAGTTATGGGTTCGATTTCGGGTGGGGCAAACCGGTTTGG TTTGCGTGCTTTTGCCCTGAGGAATCGATTCCTGTGATGGTTAATATGGTTTTGGTTAATGATACGGCGAGTGGAGATGGGTTGGAAGCTTGGGTTGTTT TGGGGGAAGATGACATGAAGGTTTTGGAAGATGACGTGGAGCTTCGTTCTTTTGTATCGGCCATTGATCCGAGTCCTATTGATGGTCGTCATGACAATGT GTTAACCATTATCAAGAGGAAAATATGA
AA sequence Show only first row Show all	>Lus10025522 pacid=23145114 polypeptide=Lus10025522 locus=Lus10025522.g ID=Lus10025522.BGIv1.0 annot-version=v1.0 MEVEIISEMCIKPSSPTPPHLKTYNFSSIDQRSTSIYAPIIVFFNTHNSIQHTSSSLKTSLSKTLTLFYPLAGKTARNDAAVSIDCTDDGVYYVEARVVS PTCTLSQYLRHDVVKDMTTLTKLLPLSDAVRMFCPPPPGSHLALFQVTFFPCGGLAIGSMMTHKIVDAPSFCYFFQAWAAAASGSNHWPPPLLSAESLFP QNQAFLETAPVPQATSSLHVSPQFVRAQSVSGALRRFVFNASAIARLKEKSKSTQANTYPSRVQAVTALIIKSILRAFELRSDTAGKTLIVQPVNLRTRA ANPPLPHNLFGNLTMRASFPLQGGKTSELSELVSLMKGSVSKIDDELVREIQGEGGKDRFVELAREMDQEEGNAERHIMCNSFSRLGSYGFDFGWGKPVW FACFCPEESIPVMVNMVLVNDTASGDGLEAWVVLGEDDMKVLEDDVELRSFVSAIDPSPIDGRHDNVLTIIKRKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	0	1
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10005320 [exp]	1.7	0.7294
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	2.2	0.7987
					Lus10025786 [exp]	3.5	0.7417
					Lus10033046 [exp]	8.1	0.6954
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	11.2	0.6936
					Lus10023538 [exp]	12.0	0.6443
					Lus10005398 [exp]	17.7	0.6189
					Lus10027003 [exp]	20.4	0.7237
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10015523 [exp]	22.5	0.6112
AT4G39830			Cupredoxin superfamily protein...		Lus10037103 [exp]	25.7	0.6536

Compare expression of checked genes

Lus10025522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.