Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 380 / 1e-129 HXXXD-type acyl-transferase family protein (.1) AT3G48720 358 / 8e-121 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 224 / 1e-68 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 206 / 8e-62 HXXXD-type acyl-transferase family protein (.1) AT5G17540 199 / 9e-59 HXXXD-type acyl-transferase family protein (.1) AT3G03480 188 / 7e-55 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT2G40230 182 / 1e-52 HXXXD-type acyl-transferase family protein (.1) AT1G03390 182 / 3e-52 HXXXD-type acyl-transferase family protein (.1) AT2G19070 167 / 1e-46 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039329 [exp] 667 / 0 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10026737 [exp] 518 / 0 AT5G41040 249 / 3e-80 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 442 / 1e-153 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 446 / 3e-153 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 432 / 9e-150 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 414 / 2e-142 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 410 / 3e-141 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 402 / 2e-137 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 393 / 2e-134 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 436 / 4e-151 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 421 / 3e-145 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 377 / 1e-128 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 327 / 1e-108 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.003G183900 [exp] 236 / 2e-73 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 234 / 2e-72 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G230900 [exp] 229 / 2e-70 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 229 / 2e-70 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G042900 [exp] 227 / 8e-70 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 223 / 4e-68 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10025523 pacid=23144977 polypeptide=Lus10025523 locus=Lus10025523.g ID=Lus10025523.BGIv1.0 annot-version=v1.0 ATGGTGATGGTGAAGCTGACCGGCGAGCCGGTGCTGGTACCGCCGGCGAGAGACACACCAAAGGGTATGCATTTCCTCTCTAACCTTGACTATTCCGACA TGGTTATATACACTTTCTTCCCTTACAAGCACTCCAAGGGTAACGAAAACGCCGCCAAAGTCATCAAGAAAGCCTTGAGTGAGGTCCTTGTTCACTACTA CCCTCTTGCCGGCCGACTCGGGGTCGATGATGAAGACGGCGGGAGGTTCGCCGTTGATTGCACCGGCGACGGAGCGGTTTTTGTTGAGGCTGACGCAGAT TGCGAGTTGGGGTACATCGATTTATCGAAACCGGATCATGTGACTCGGGCCAAGCTGGTGTATATGATCGCCGGTGCGAAGAGTACCATTGAGATTCCTC CGTTAATGATTCAGATGACAAGGTTCACCTGTGGGGGATTCGTGCTAGGAATGTCTTGGAACCATTATCTTGGAGACGGGATAGCCGCCATCGAGTTCGT CAACTCCTGGGCAGAAACGGCACGAGGCTTGCCGCTTTCGGTCCCGCCATTCCTCGACCGAACGTTACTCAAAGCACGAGTACCACTATCGATCGACTAC CACCACTCCGAATATGACGATTTGAAGGACATATCGTCAAGCTTCAACGAGTTCCATAACGAGCCTATAGTCTTCGAGTACGCCCACTTCACCGAAGCCA AAATCCGTAAGATCAAGCAACAAGTCCTCTCCGGAGGCAGAGAACTCGTCACTGGTTGCTCCACTTTCGAAGCAGTCGTAGCTTTCGTATGGCGGGCTCG AATCAAGGCCCTCGAGATGATCCCTGACCAAGAGACACGACTCATGTTGGTGGTCAACGCTAGGGACAGGCTGGACCCGCCGCTGCCCAAAGGGTATTTC GGGAACGCGGTCAAGATGATGACTGCCGGCACGTGGACGGCACGCGACATCTTGGACAAGCCGCTTTGTTATGCGGTGAAGAAAATTCAGGACGGGATCG CCGAGTGTGGTGACGGGGTTATAAGGTCTACTATTGATTACATGGAAAGTACAAGAGTAGCGACACGGCCTCTAGGTAGCACGATGATAGCGACCGCGTG GTATAGGCTGCCCACGAATTCGGCCGATTTCGGTTGGGGCAGACCGCTGGCTTTCGAACCGGTCGAGTCGCCTCAGTACGAATCGATTACTTTTCTAGCT CATCATGAAGAACTGAAGAGCTTAAATGCGTTTATTGGACTGCCGATCTCCGCTATGAAAACTTTCCAAGAATTGGTGGCGCAGATCTAA
AA sequence Show only first row Show all	>Lus10025523 pacid=23144977 polypeptide=Lus10025523 locus=Lus10025523.g ID=Lus10025523.BGIv1.0 annot-version=v1.0 MVMVKLTGEPVLVPPARDTPKGMHFLSNLDYSDMVIYTFFPYKHSKGNENAAKVIKKALSEVLVHYYPLAGRLGVDDEDGGRFAVDCTGDGAVFVEADAD CELGYIDLSKPDHVTRAKLVYMIAGAKSTIEIPPLMIQMTRFTCGGFVLGMSWNHYLGDGIAAIEFVNSWAETARGLPLSVPPFLDRTLLKARVPLSIDY HHSEYDDLKDISSSFNEFHNEPIVFEYAHFTEAKIRKIKQQVLSGGRELVTGCSTFEAVVAFVWRARIKALEMIPDQETRLMLVVNARDRLDPPLPKGYF GNAVKMMTAGTWTARDILDKPLCYAVKKIQDGIAECGDGVIRSTIDYMESTRVATRPLGSTMIATAWYRLPTNSADFGWGRPLAFEPVESPQYESITFLA HHEELKSLNAFIGLPISAMKTFQELVAQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10025523 [exp]	0	1
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10041355 [exp]	47.3	0.8203
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	52.9	0.8210
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	55.4	0.8205
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001164 [exp]	96.5	0.8086
AT3G19200			unknown protein		Lus10014046 [exp]	119.9	0.7975
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	155.9	0.7906
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	157.3	0.7946
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10041846 [exp]	187.7	0.7828

Compare expression of checked genes

Lus10025523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.