Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08910 49 / 8e-07 unknown protein AT1G78170 47 / 3e-06 unknown protein AT1G22250 43 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026738 [exp] 275 / 1e-93 AT1G78170 54 / 1e-08 unknown protein Lus10001804 [exp] 41 / 0.0004 AT2G33510 145 / 8e-44 unknown protein Lus10002577 [exp] 40 / 0.0004 AT2G33510 99 / 1e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231400 [exp] 115 / 7e-32 AT4G08910 54 / 4e-09 unknown protein Potri.014G150900 [exp] 114 / 2e-31 AT4G08910 49 / 3e-07 unknown protein Potri.005G165300 [exp] 75 / 3e-16 AT1G78170 124 / 4e-35 unknown protein Potri.002G096100 [exp] 69 / 8e-14 AT1G78170 119 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025524 pacid=23145097 polypeptide=Lus10025524 locus=Lus10025524.g ID=Lus10025524.BGIv1.0 annot-version=v1.0 ATGGAGTTCACCACCGAGCTCTCGTTGGCTTCTTCCAGGAAGTTCGACTCCTCCGAAACATCCTCCGAATCCGGTACCAACAACAACAACGTCAACCCTA AGAAGAGAAAGACGAGGACGACGACGACGACGACGATGATGAGTCCGGACTCTTGCAAGTACTCCTCCAACAAAAGTAATGATCTTCATCATGTTATGAT GAACAACAACCGCCGCCCTCTTCCTTTGGACTGGGAGCAATGCCTCGACCTTCATTCGGGGATGATGTACTATATGAACAGGAAGACGTCGAGGAAGAGT TGGAACTTGCCGAACTACAAGGACGATGATGATGATCATGATGATGATCGTAGTGATGCCAATTATCTGGACCTCGAACTCAACATGTCCAACAACTACT CTAATTCGAGCCGTGTGAAGACGACCAAGCTCCTTGTAGCGGAAGAAGGGAGAACGGTGAGCAATGATAAAGATAAAGACGAGGGGTGTAACAACACAGT GGCGCTGGCGTGCTCGAACTGCCATCTGCTTGTGATCCTGTCGAAATCGTCTCCTTCGTGCCCGAACTGCAAATACATCCATGCACTTAACCCTACACTG GTCCACTCCCCACGAGCAAAGAATGATCTTATAAGTGGTGATCATAGTTACAATAATGGTGGTACTAGGGTTCAACGACATCCTCCTCACAAGCCCATTA ATAGCACCTTGAGCCTCCTCAATTGA
AA sequence Show only first row Show all	>Lus10025524 pacid=23145097 polypeptide=Lus10025524 locus=Lus10025524.g ID=Lus10025524.BGIv1.0 annot-version=v1.0 MEFTTELSLASSRKFDSSETSSESGTNNNNVNPKKRKTRTTTTTTMMSPDSCKYSSNKSNDLHHVMMNNNRRPLPLDWEQCLDLHSGMMYYMNRKTSRKS WNLPNYKDDDDDHDDDRSDANYLDLELNMSNNYSNSSRVKTTKLLVAEEGRTVSNDKDKDEGCNNTVALACSNCHLLVILSKSSPSCPNCKYIHALNPTL VHSPRAKNDLISGDHSYNNGGTRVQRHPPHKPINSTLSLLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08910			unknown protein		Lus10025524 [exp]	0	1
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003565 [exp]	2.6	0.8206
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	3.0	0.8322
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	3.6	0.8521
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	5.2	0.8193
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10000112 [exp]	5.8	0.7919
					Lus10024103 [exp]	6.3	0.8308
AT2G35760			Uncharacterised protein family...		Lus10038800 [exp]	12.6	0.7828
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	13.3	0.7944
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10003990 [exp]	15.1	0.7587
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	15.3	0.7912

Compare expression of checked genes

Lus10025524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.