Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20920 400 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G09620 332 / 6e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 219 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 199 / 2e-58 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 189 / 1e-53 DEAD box RNA helicase family protein (.1.2) AT3G01540 185 / 1e-52 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G47330 184 / 1e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 185 / 2e-51 DEAD box RNA helicase family protein (.1) AT1G31970 171 / 6e-48 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G58510 169 / 1e-46 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026739 [exp] 411 / 1e-142 AT1G20920 174 / 9e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035327 [exp] 304 / 3e-94 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019484 [exp] 208 / 5e-61 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 204 / 1e-59 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037646 [exp] 198 / 5e-58 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 198 / 5e-58 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10029986 [exp] 199 / 9e-58 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032133 [exp] 188 / 3e-53 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 187 / 5e-53 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257400 [exp] 419 / 2e-136 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 416 / 4e-135 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 211 / 3e-62 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 207 / 1e-60 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 205 / 1e-60 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 186 / 3e-52 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 187 / 6e-52 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.001G347100 [exp] 182 / 1e-50 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.002G194600 [exp] 173 / 2e-47 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G098800 [exp] 167 / 3e-46 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10025525 pacid=23145007 polypeptide=Lus10025525 locus=Lus10025525.g ID=Lus10025525.BGIv1.0 annot-version=v1.0 ATGGACGAGGCTGATCAAATGTTTGACATGGGTTTTGAACCTCAGATCGCTAGGATTGTGCATAACATACGTCCCGATCGTCAAACCGTTCTGTTTTCCG CCACCTTCCCGCAGAAGGTGGATAACTTGGCACGCAAGGTATTGAACAAACCATCGAAGATACAAGAAGCTGGTGGGAGGAGTGTGGTGAATAAGGACAT AACCCAGCTGGTTGAGGTTAGGCCGGAGAAAGATAGGATCTTTAGACTGTTAGAGCTTCTGGGTGAACGAGATTCCGAGAATGGGAAGAATAAAATCATA GTGTTTGTCGAGAAACAGGAGAAATGCGACGAGCTATTTCGAACTCTGTTGATGTATGGCCATCCTTGTCTTTCTTTCCATGGAGGGAAAGACCAGCAAG ATCGTGAATCGACGATTTCCGATTTCAAGAACAACGTTTGCAGTGTACTAATCGCGATGAGTGTCGCGGCCAGGGGACCGGGCGTGGAGGATGTCGAGTT AGTGGTCAATTACAACGTCCCGAACCACTATGAAGATTATGTTCACCGTGTTGGGAGAACAGGGCGAGCTGGTCGCAAAGGCTGTGCAATCACTTTTGTG TCCGAGGATGATGCGAAATACGCTCAGGATCTTGTGAAGGCGTTGGAGCTTTCGGGGCATACCATGCCAGAGGATTTGAGATGTCTTGCTGGCGGGTTCA TGGCGAAAGTGAGTCAGGGGCTCGAGCTGGCTTGTCAGGGGTCTGGCTATGGTGGAAGCGGGTTCAAGTTTGACCAAGAGGAGGAGGAGAAGAGGGTTGC AGTTAAGAAAGCACAGCCGAAAGAGTACGGCTTTGAGCAAGATGAGGAGGAGGAAGAAAACACGATTTCGGAAAATGATGATATCGATGAAGGAATTAGG ATGTCAGGGGACAATGGGATTGCGAGAGCACTTGCTGCGGTCATGAAGGTGCAAGGTGAGCATTATGAAGCGGAGTTGGAGATCAATGATTTCCCACAGA ATGCTAGGTGGAAGGTGACGCACAAGGCTATGCTGGGACCGATTTCGGAATGGACCGGAGCTGCCATCACGACGAGAGGACGGTACATCCAACTGGGGGG TGTGGCAGTTGGGGGTGAGCAGAAGCTCTACTTGTTCATCGAAGGTTCGAATGAAGCTTCGGTGAAGAGAGCCAAGGCTGAGCTAAAGCGAGTGCTTGAA AGCGTTACTACTAGCCACACACAACCTGGTAGATACTCTGTTGTTTAA
AA sequence Show only first row Show all	>Lus10025525 pacid=23145007 polypeptide=Lus10025525 locus=Lus10025525.g ID=Lus10025525.BGIv1.0 annot-version=v1.0 MDEADQMFDMGFEPQIARIVHNIRPDRQTVLFSATFPQKVDNLARKVLNKPSKIQEAGGRSVVNKDITQLVEVRPEKDRIFRLLELLGERDSENGKNKII VFVEKQEKCDELFRTLLMYGHPCLSFHGGKDQQDRESTISDFKNNVCSVLIAMSVAARGPGVEDVELVVNYNVPNHYEDYVHRVGRTGRAGRKGCAITFV SEDDAKYAQDLVKALELSGHTMPEDLRCLAGGFMAKVSQGLELACQGSGYGGSGFKFDQEEEEKRVAVKKAQPKEYGFEQDEEEEENTISENDDIDEGIR MSGDNGIARALAAVMKVQGEHYEAELEINDFPQNARWKVTHKAMLGPISEWTGAAITTRGRYIQLGGVAVGGEQKLYLFIEGSNEASVKRAKAELKRVLE SVTTSHTQPGRYSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	4.4	0.8212
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	5.5	0.8136
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	7.1	0.8104
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10002369 [exp]	7.6	0.7235
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	8.0	0.8003
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	8.0	0.7807
AT3G42960		ASD, ATA1	TAPETUM1, TAPETUM 1 (.1)		Lus10019945 [exp]	8.1	0.6883
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	8.8	0.7675
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	8.9	0.7885
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	10.2	0.7561

Compare expression of checked genes

Lus10025525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.