Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09925 43 / 0.0002 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G28290 44 / 0.0003 AGP31 arabinogalactan protein 31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026740 [exp] 261 / 2e-75 ND 52 / 1e-06 Lus10009837 [exp] 54 / 4e-08 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 50 / 1e-06 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151101 [exp] 204 / 5e-55 ND / Potri.002G231250 [exp] 202 / 2e-54 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04554 [flax] [poplar] Extensin_2 Extensin-like region CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10025526 pacid=23145101 polypeptide=Lus10025526 locus=Lus10025526.g ID=Lus10025526.BGIv1.0 annot-version=v1.0 ATGTGGGTTCTGTGGCTGGTGATGCTGCCTACGTTTACTCCTCTCCTCCTCCTCCGTATGAGTACAAATCGCCGCCACCTCCTTCCCCGTCACCTCCTCC TCCTTACGTTTACAAGTCGCCGCCACCACCTTCACCGTCCCCTCCGCCACCTTACGNNNNNNNNNNNNNNNNNNNCCCCGCACCCTGAGTATGACAACTC TCCTCCCCCCCCATCCCCGTCACCTCCCCCACCTTACGAGTACAAGTCTCCTCCTCCTCCTTCACCGTCACCACCGCCACCTTACGAGTACAAGTCTCCC CCTCCTCCTTCACCGTCACCACCGCCACCATACGAGTATAAGTCTCCCCCTCCTCCTTCACCGTCACCTCCGCCACCTTACGAATACAAATCTCCACCAC CTCCATCGCCGTCACCACCGCCACCATACTACTACAAGTCGCCGCCGCCGCCTTCACCCTCTCCTCCTCCACCATACTACTACAAATCTCCACCACCTCC GTCTCCATCGCCACCACCACCATACCACTACTCTTCTCCACCACCACCTAAAAAATCACCTCCACCACCGTATTATTACAAATCTCCACCACCACCTTCG CCATCTCCACCGCCACCTTATCACTACTCTTCTCCACCGCCACCAAAGAAATCACCTCCTCCGCCATACTACTACAAATCTCCACCACCACCTTCACCAT CTCCTCCACCACCTTACCACTACTCCTCTCCACCACCACCTAAGAAATCACCTCCACCACCATACTACTACAAGTCTCCACCACCACCTTCACCCTCTCC TCCACCACCGTACTACTATAAGTCTCCGCCGCCACCATCACCCTCTCCTCCGCCACCATACTACTATAAATCCCCGCCGCCACCATCCCCATCTCCTCCA CCACCGTACTACTACAAGTCCCCACCACCACCTTCACCGTCTCCACCACCACCATACTACTACAAATCTCCACCGCCGCCATCACCATCACCTCCCCCAC CATACTACTACAAATCCCCACCACCACCCGCAAAATCTCCCCCACCACCACCGTACTACTACAAGTCTCCGCCACCACCCAAGGCTTACCCTCCTCCTTA CCACTACACATCACCGCCGCCGCCGGCAGTCTATCCCCATGAGCTGACTATCAAGGTTGTCGGAAAAGTGTATTGCTATAGATGTTATGACTGGGCTTAC CCAACGAAGTCACACGACAAGAAGCACCTTAAAGGAGCCGTGGTGGAAGTAACTTGCAAGGCAGGGGAAAAGGAAATCAAGGCGTACGGGAAGACCAAAA TCAACGGCAAATATAGCATCACCGTCGACGGATTCGAGTACGGCAAATATGGAGCCAAGGCTTGCACAGCTAAGCTTCACGCTCCGCACAAGGGTTCCAA GTGTAGCATCCCGACCAAGCTTCACGGCGGAAACAAGGGTGCCGAGCTGAAAGTGAAGTCCAAGGATTACCACTTGATTGTGTTGCAGGCTAAGTCCTTT GCTTATGCTCCTAAGAAGCCTTACGCAGAGTGTGACAAGCCTAAGCCAAAACCCACACCTCCTCCTTACTATTATAAGTCTCCACCACCACCATCACCTA AACCATACTACTACAAATCCCCGCCTCCTCCTCCTCCAACTTACGTGTACAAGTCCCCGCCACCACCGGCTTACGTGTACAAGTCACCACCACCACCGGC TTACATATACAAGTCGCCGCCACCTCCTTCACCTAAGCCATACTACTACAAGTCACCACCTCCTCCGACTTACGTCTACAAGTCTCCACCACCACCTGCT TACGTGTACAAGTCGCCTCCACCACCGGCATATGTGTACAAGTCACCACCACCTCCTTCACCTAAGCCATACTACTACAAGTCACCACCTCCTCCGACTT ACGTCTACAAGTCTCCACCACCACCTGCTTACGTGTACAAGTCGCCTCCACCACCGGCATATGTGTACAAGTCACCACCACCTCCTTCACCTAAGCCATA CTACTACAAGTCACCACCTCCTCCGACTTACGTCTACAAGTCTCCACCACCACCTGCTTACGTGTACAAGTCATACTTGAGTGCATTGAAGCCATTATCC TGA
AA sequence Show only first row Show all	>Lus10025526 pacid=23145101 polypeptide=Lus10025526 locus=Lus10025526.g ID=Lus10025526.BGIv1.0 annot-version=v1.0 MWVLWLVMLPTFTPLLLLRMSTNRRHLLPRHLLLLTFTSRRHHLHRPLRHLTXXXXXXXPHPEYDNSPPPPSPSPPPPYEYKSPPPPSPSPPPPYEYKSP PPPSPSPPPPYEYKSPPPPSPSPPPPYEYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYHYSSPPPPKKSPPPPYYYKSPPPPS PSPPPPYHYSSPPPPKKSPPPPYYYKSPPPPSPSPPPPYHYSSPPPPKKSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPP PPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPAKSPPPPPYYYKSPPPPKAYPPPYHYTSPPPPAVYPHELTIKVVGKVYCYRCYDWAY PTKSHDKKHLKGAVVEVTCKAGEKEIKAYGKTKINGKYSITVDGFEYGKYGAKACTAKLHAPHKGSKCSIPTKLHGGNKGAELKVKSKDYHLIVLQAKSF AYAPKKPYAECDKPKPKPTPPPYYYKSPPPPSPKPYYYKSPPPPPPTYVYKSPPPPAYVYKSPPPPAYIYKSPPPPSPKPYYYKSPPPPTYVYKSPPPPA YVYKSPPPPAYVYKSPPPPSPKPYYYKSPPPPTYVYKSPPPPAYVYKSPPPPAYVYKSPPPPSPKPYYYKSPPPPTYVYKSPPPPAYVYKSYLSALKPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	0	1
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	1.7	0.9625
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	3.5	0.9583
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	4.2	0.9600
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	4.9	0.9624
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	7.9	0.9512
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	8.5	0.9518
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	8.7	0.9458
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	8.8	0.9517
AT3G10120			unknown protein		Lus10039676 [exp]	10.4	0.9363
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	10.6	0.9358

Compare expression of checked genes

Lus10025526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.