Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43160 610 / 0 ENTH/VHS family protein (.1.2.3.4) AT3G59290 458 / 5e-146 ENTH/VHS family protein (.1) AT5G11710 242 / 7e-70 ENTH/VHS family protein (.1) AT3G23350 78 / 2e-15 ENTH/VHS family protein (.1) AT3G46540 73 / 1e-13 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026741 [exp] 1206 / 0 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10019571 [exp] 753 / 0 AT2G43160 588 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10007460 [exp] 243 / 6e-70 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1) Lus10005498 [exp] 226 / 5e-63 AT5G11710 489 / 4e-166 ENTH/VHS family protein (.1) Lus10021173 [exp] 91 / 3e-19 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 90 / 8e-19 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10040824 [exp] 74 / 1e-13 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 72 / 5e-13 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 48 / 1e-05 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151300 [exp] 691 / 0 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.002G231100 [exp] 653 / 0 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 236 / 1e-67 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 72 / 3e-13 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 71 / 8e-13 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 53 / 5e-07 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10025527 pacid=23144983 polypeptide=Lus10025527 locus=Lus10025527.g ID=Lus10025527.BGIv1.0 annot-version=v1.0 ATGAAGAAGGTCTTCGACCAGACTGTTAGGGACTTAAAGAGAGAGGTGAACAAGAAAGTGCTTAAAGTACCAGGCATAGAGCAGAAGGTTCTTGATGCTA CAAACAACGAGCCCTGGGGTCCTCATGGATCACTGCTTGCAGATATCGCACAAGCTACCAGAAACTATCATGAATACCAGATGATTATGTCAATTATCTG GAAACGAATCAATGACACAGGCAAGAACTGGCGACATGTCTACAAGGGGTTGACTGTCTTGGAATATCTAGTGGCTCATGGGTCAGAACGAGTCATAGAT GACATAAAAGAACATGCTTATCAGATATCGACACTGTCCGAATTTCAGTACATTGATTCCAGTGGAAGAGACCAGGGTAGCAATGTCAGGAAGAAATCTC AAAATCTTGTTGCTCTGGTGAATGATAAAGAAAGGATTGTTGAAGTTAGACAGAAAGCTGCCGCTAACAGGGAAAGGTTCCGCAGCCCATCAGCAGGTGG AATGCACAGGCCTGGTTCTCATTCTGTTGGAGGATATGGCGAACGGTATGATGATGATCGCTATGAGGGCCGCTATGGAAATAGGGATGAAGAGCGGAAT GGATATGGAAGAGAAAGAGAAAACAATTATAGGGACGATGACCGATATGGTAGATATGGCGATTCATATAATCGGGATGGAAACAGAGATGAAGAACGCT ATGGCCAGGATGGAGACAGGGATGATGCTTACAGGGGAAGAAGTCGTAGCAATGATGGCTATGGTTCGAGAGGCAGGAGTTCTGATAGAGATCAAGGCCA TGATGAAGATGGCCAATACTCATCTCGTGGTAGTTGTGCTAGAGCGAATGATCACTCCCACGATGGGAGGCCCCTTGAGAGAAAGTTTTCTGAGCAAAAT ATTGGTGCACCTCCTAGTTATGAAGAAGCTGTAAATGAAGCCGCTAGCCCTGCCCACAGTGAAAAGAATAGAGAAACTTCTGTGCCATCTGGCCCCGTGG AATCCTCTCCGTCAGCTCCTCTCGCTTCTTCCTCACCTGCTCCTCAAGTTTCTCAATCTGCAAGTAATGCCTTAAAAGAACCCTCTGGTTTCAGCTCATC TGTCTCCCCTGCCAACCAAGAAGTAATGGTAGATGAATTTGATCCACGCGGCACTTTTGTAGCTTTTCCGACTTCCTCGGCAGCTCCAACTACCTCTACT GCTTCAGCAACTGCAAACAATGCTGAAATGGATTTGCTTGGTTCTCTCTCAGAATCATTTGGTCCATTAGCGGTTGTTCCAGTTTCTTCTTCAACTACTT CCTCTGAACATTCTCAGCCAAATTACTCGGCACCCTCATTTGCTTCAACGCAACCAACTTTTGCCAATCAAGGATTTGAAGATCCATTTGGTGACAATCC CTTCAAGGCTGTTCCTTCAACTAGTGTTCTCCCAGAACAACCAAACCTTTCAGTTTCTGCTGCTGCATCCCAGAATTCGGCGAATCAATATGCCGAAGTG CCACATGTAACTGTTCCAAATACTGAAATGGAGAGGAACTCGCCCTTCGGTGATACGACCTCTAGCTTGAGTTATTCTGCGCCTGATTTTCAGTCTACCT CAGCTACCTCCCAGTTCTTACCTCAAGAACTTTCCTCTTCAAATCACGAAACTGATATACTAGCAGATATCCTCCCCCCTTCTGGGCCAGCACCACAGGC AGGGCTTCCAGCTCAAACTGGTCAAACCCCGTTCCCGGTTGGTAATGTATATGGAAACTTCAATTCACAGACAGGATCTGCAGTTCCAGCAGCTCCAAAC ATGGCTCCTCCGACTTCACAGTTCAGTAGTGGCAATGGCAGTTTTATGCCGCAGGGAGGTTCCATGAGTCCAACCTCTGGATTTACTACACAGTCAGGGT ATGGAGCTCCAGCTGCACATCAGATCCCTAGTCAAATGGCAGCTGGACCATCGGAAGCTGCTTCTTATGCCCCTCCTGGACCAACTGCTCAGCACAACAC TGGTGTCCTAGGTGGTTTCTATGCACAAGGAGCAAGTGCTCCATTGACTTCCCAGCCTGGTCAGTCTTTGGCTTCTCAGCCCAGCCTCTCTTCTTCAACT GGTGCACTTGTTCCCGTTTCTCAGCCGTCGAAAGACAAATTTGAAACCAAATCAACAGTCTGGGCTGATACTCTCAGCAGAGGGCTCGTTAATTTGAACA TATCAGGATCTAAGACGAATCCATTGGCTGACATCGGAGTTGATTTTGATGCAATTAATCGCAAAGAAAAGAGAATGTCGAAACCAACCACTACTACGAA TGTCGCATCTACTGTCACCATGGGGAAAGCCATGGGATCTGGTTCTGGAATTGGCCGAGCAGGTGCAACTGGTATAAGGCCGCAACCCTCAAACATGATG ATGGGTCCAAGTGCCGGCATGGGTATGGGTATGGGCCTGGCTGGGGGTCCCGGACCCGGAATGGGTATGGGCATAGCTGGCTCGGGTCCCGGCATGGGTA TGGGAGGCTACGGAAGAATGGCTCAACCGATGGGAATGGGAATGAATGGTATGCAAATGAACGGAATGGGGAATATGCAGCAGCCTCTAAGTGGACTGCC CCAACAAGGACCACCAATGTCGATGCCCGGTGGCTATAATAATATGATGATGGGCGGAGGTGGTTACCCGCAACAGTCGTATGGTAGAGGCTACCAGTGA
AA sequence Show only first row Show all	>Lus10025527 pacid=23144983 polypeptide=Lus10025527 locus=Lus10025527.g ID=Lus10025527.BGIv1.0 annot-version=v1.0 MKKVFDQTVRDLKREVNKKVLKVPGIEQKVLDATNNEPWGPHGSLLADIAQATRNYHEYQMIMSIIWKRINDTGKNWRHVYKGLTVLEYLVAHGSERVID DIKEHAYQISTLSEFQYIDSSGRDQGSNVRKKSQNLVALVNDKERIVEVRQKAAANRERFRSPSAGGMHRPGSHSVGGYGERYDDDRYEGRYGNRDEERN GYGRERENNYRDDDRYGRYGDSYNRDGNRDEERYGQDGDRDDAYRGRSRSNDGYGSRGRSSDRDQGHDEDGQYSSRGSCARANDHSHDGRPLERKFSEQN IGAPPSYEEAVNEAASPAHSEKNRETSVPSGPVESSPSAPLASSSPAPQVSQSASNALKEPSGFSSSVSPANQEVMVDEFDPRGTFVAFPTSSAAPTTST ASATANNAEMDLLGSLSESFGPLAVVPVSSSTTSSEHSQPNYSAPSFASTQPTFANQGFEDPFGDNPFKAVPSTSVLPEQPNLSVSAAASQNSANQYAEV PHVTVPNTEMERNSPFGDTTSSLSYSAPDFQSTSATSQFLPQELSSSNHETDILADILPPSGPAPQAGLPAQTGQTPFPVGNVYGNFNSQTGSAVPAAPN MAPPTSQFSSGNGSFMPQGGSMSPTSGFTTQSGYGAPAAHQIPSQMAAGPSEAASYAPPGPTAQHNTGVLGGFYAQGASAPLTSQPGQSLASQPSLSSST GALVPVSQPSKDKFETKSTVWADTLSRGLVNLNISGSKTNPLADIGVDFDAINRKEKRMSKPTTTTNVASTVTMGKAMGSGSGIGRAGATGIRPQPSNMM MGPSAGMGMGMGLAGGPGPGMGMGIAGSGPGMGMGGYGRMAQPMGMGMNGMQMNGMGNMQQPLSGLPQQGPPMSMPGGYNNMMMGGGGYPQQSYGRGYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	0	1
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	1.4	0.9000
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	3.0	0.8804
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	4.0	0.8815
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	4.5	0.8565
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	4.7	0.8529
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	5.9	0.8683
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	7.2	0.8378
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10035695 [exp]	8.5	0.8298
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	9.4	0.8591
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	9.6	0.8343

Compare expression of checked genes

Lus10025527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.