Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12480 473 / 9e-166 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 473 / 2e-165 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT5G19450 466 / 8e-163 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT1G74740 414 / 2e-142 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G51850 406 / 3e-139 CPK13 calcium-dependent protein kinase 13 (.1) AT1G18890 402 / 1e-137 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G41860 323 / 9e-107 CPK14 calcium-dependent protein kinase 14 (.1.2) AT4G38230 300 / 2e-98 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT4G35310 300 / 9e-98 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT5G04870 298 / 2e-96 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030134 [exp] 492 / 1e-173 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10036667 [exp] 446 / 2e-155 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1) Lus10026742 [exp] 436 / 4e-151 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10042185 [exp] 415 / 4e-144 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10005038 [exp] 400 / 2e-138 AT3G51850 793 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 400 / 4e-137 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10008631 [exp] 399 / 6e-136 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10042370 [exp] 358 / 2e-120 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10027361 [exp] 321 / 5e-106 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117200 [exp] 415 / 6e-143 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.015G066200 [exp] 415 / 1e-142 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 411 / 4e-141 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G054600 [exp] 356 / 8e-120 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 343 / 2e-114 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G200600 [exp] 333 / 1e-109 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.009G052700 [exp] 329 / 2e-109 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.001G257100 [exp] 325 / 2e-107 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.016G066700 [exp] 310 / 8e-101 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.004G207300 [exp] 308 / 2e-100 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10025528 pacid=23145061 polypeptide=Lus10025528 locus=Lus10025528.g ID=Lus10025528.BGIv1.0 annot-version=v1.0 ATGAGACATTTGCCTGTGCACCAAAACTTTGTTACATTGAAGGATACTTACGAGGATGATGCTGCTGTGCATTTGGTGATGGAGTTGTGTCAAGGTGGAG AGTTGTTTGATAGGATTATTGCTAGAGGTCATTACACTGAAAGAGCTGCTGCTTCTGTCCTCAAGACCATTGTGGAGGTTGTTCAGATGTGCCATACACA TGGAGTAATGCATAGAGATCTAAAGCCTGAGAACTTTTTGTTTGCGAATAAAAAGGAGACTGCGCCTCTCAAGGCCATTGACTTTGGGCTGTCAGTGTTT TTCAAGCCTGGCGAGACATACACTGAGATTGTGGGAAGTCCATATTACATGGCTCCTGAAATGCTCAACCCTGATCCCAAACGTCGCCTCACAGCCCAGG AAGTGCTAGATCATCCTTGGCTGCAAAATTCGAGCAGTGCTCCCAATGTTTCCTTGGGGGATGCGGTAAAAGCAAGGCTCAAGCAATTCTCTGCAATGAA CAAGCTCAAGAAAAGGGCTTTAAGGGTGATCGCTGAGCGCTTATCAGTGGAGGAAGCTGCAAGCATCAAGGAGGGTTTCCAGCTTATAGATGCTAGAAAC ATTGGGAAGGTTAACATTGACGATCTGCGTATTGGCTTACAGAAGTTAGGCCATCAAGTCACTGAGGCTGATATTCATAATCTAATGGAAGCTGGTGATG TTGATGGGGACGGATATCTGGACTATGGAGAGTTTGTGACCATTTCTGTTCACCTAAGAAAGATAGGGAACGATGACCACATTCGCAAAGCTTTCGAGTA CTTTGACCGAAACCAAACCGGGCACATCGAGATCGAAGAGCTACGTGAAGCTTTGGCAGACGATGTCGATGCACAGGGCGAAGAAATTATCAGCGCCATT ATACAAGATGTTGACACGGACAAGGATGGAAAAATAAGCTACGATGAGTTTGCAGCAATGATGAAAGCCGGTACAGACTGGAGGAAGGCATCAAGGCAGT ATTCGAGAGAACGGTTCAGCAATTTGAGTATGACACTAATGGAGGACGGATCTTTGCGGGGGAGCAAAGATTAA
AA sequence Show only first row Show all	>Lus10025528 pacid=23145061 polypeptide=Lus10025528 locus=Lus10025528.g ID=Lus10025528.BGIv1.0 annot-version=v1.0 MRHLPVHQNFVTLKDTYEDDAAVHLVMELCQGGELFDRIIARGHYTERAAASVLKTIVEVVQMCHTHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVF FKPGETYTEIVGSPYYMAPEMLNPDPKRRLTAQEVLDHPWLQNSSSAPNVSLGDAVKARLKQFSAMNKLKKRALRVIAERLSVEEAASIKEGFQLIDARN IGKVNIDDLRIGLQKLGHQVTEADIHNLMEAGDVDGDGYLDYGEFVTISVHLRKIGNDDHIRKAFEYFDRNQTGHIEIEELREALADDVDAQGEEIISAI IQDVDTDKDGKISYDEFAAMMKAGTDWRKASRQYSRERFSNLSMTLMEDGSLRGSKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	0	1
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10035929 [exp]	1.4	0.9684
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	3.5	0.9709
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	3.5	0.9680
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	7.3	0.9631
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	9.2	0.9587
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	10.2	0.9617
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	12.1	0.9680
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	12.2	0.9628
AT3G47570			Leucine-rich repeat protein ki...		Lus10019525 [exp]	13.3	0.9570
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	14.1	0.9568

Compare expression of checked genes

Lus10025528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.