Plant FIBer expression Database

Lus10025529 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43180 607 / 0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
AT1G77060 195 / 7e-58 Phosphoenolpyruvate carboxylase family protein (.1)
AT1G21440 188 / 3e-55 Phosphoenolpyruvate carboxylase family protein (.1)
AT3G21720 62 / 3e-10 ICL isocitrate lyase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026743
[exp]
877 / 0 AT2G43180 600 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Lus10031552
[exp]
61 / 1e-09 AT3G21720 998 / 0.0 isocitrate lyase (.1)
Lus10015122
[exp]
61 / 2e-09 AT3G21720 1003 / 0.0 isocitrate lyase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G231000
[exp]
749 / 0 AT2G43180 589 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Potri.002G073600
[exp]
75 / 9e-16 AT1G77060 214 / 3e-70 Phosphoenolpyruvate carboxylase family protein (.1)
Potri.007G122900
[exp]
61 / 1e-09 AT3G21720 951 / 0.0 isocitrate lyase (.1)
Potri.017G036900
[exp]
61 / 1e-09 AT3G21720 924 / 0.0 isocitrate lyase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0151 PK_TIM PF00463 ICL Isocitrate lyase family
Representative CDS sequence
>Lus10025529 pacid=23145004 polypeptide=Lus10025529 locus=Lus10025529.g ID=Lus10025529.BGIv1.0 annot-version=v1.0
ATGAATGCACTAACCCAAATTTCTGTTGCTCATCCTTCTTTCTCACAGTCCTCTCTGCCATCCTCACCCACCTTCTCCTTACCATTCCCTTCTTCTTCTT
CTCCTTCCAACTTCAAACCCCGCAACTCCCTTTTACTCTTCAACAACAATGTCTTCAGCGCCACAAAACGACGGATATCAAGAGCCACCAGAGTAGTTTG
CTCTGCTTCTGACTCGCCGGCGAAGACTCTCCGATCCATCCTCGACTCCCCTGGAGTTCACCAAGGTCCTGCTTGTTTCGACGCTCTCAGCGCTAAGCTT
GTTGAGAAATCCGGATTTCTCTTCTGCTTTACCAGTGGGTTTTCGATATCAGCTGCTAGATTGGGGCTGCCTGATACTGGATTCATATCCTATGGGGAAA
TGGTGGATCAAGGGCAGCAAATCACTCAAGCTGTGTCAATCCCTGTTATTGGAGATGGTGATAATGGATATGGGAATGCCATGAGTGTTAAAAGGACAGT
CAAGGGATACATTAATGCTGGTTTTGCTGGCATCATTCTTGAAGACCAGGTGTCTCCAAAAGCTTGTGGCCATACCCGCGGTAGGAAAGTGGTCTCGCGA
GAAGAGGCAGTGATGAGGATAAAAGCAGCTGTTGATGCACGGCAAGAGTCTGGCTCTGACATAGTGATTGTCGCACGAACTGATTCTCGTCAAGCGATTT
CCTTGGACGAAGCACTCTGGAGGTCCGGAGCTTTTGCTGAAGCTGGGGCGGATGTCCTTTTCATTGATGCATTAGGTTCAAGAGAAGAAATGAGAGCTTT
CTGTGACGTATCTCCTCAAGTTCCAAAAATGGCCAATATGCTTGAAGGAGGTGGTAAAACTCCCATACTCAACCCCTTGGAGCTGGAGGAAATTGGCTAC
AAGCTTGTGGCGTATCCTCTTTCCTTGATTGGAGTCTCCATTCAAGCAATGCAGGATGCACTTACTGCCATTAAGGGAGGCCGGATTCCTCCTCCTGGAA
GCATGCCTTCATTTGAAGAAATAAAGGAGACCTTAGGGTTCAATGCTTACTATGAAGAAGAGAAGCGGTATGCTACTAGCAGCAACTCAGTTTCCAGGCA
GCCAGCAAGCAGTAATGTTTATTCTGTACAACGGAGGGATCAAGATGATAAAGAACAAAGAAGTGAAAGTCCCCAAGAGCCTGTTGTGGAAGTGATTACT
CCTGATGTATACAATGCCTATGGTGCAGATGGTTCCAGAGGTCCCTTTTCTGGAATCTGGTCGCGAACATTGAGGGTTAAGATAACTGGCAATGATGGGT
TTGAGAAACTTGACGTTAGAATTCCTGCTGGTTTCTTGGATGGAATAACTAACATCGTACCGGCTTTGGGAGGTGTCAACATCAAAGAACTGTTGGATGA
GGCGGCCGGTGAAGCAGGAGGCAAGCTGCTGTTGGATTTCAAAGACACAGTGGGCGACAGAATTCAAGTCTTCCTAGAGTGA
AA sequence
>Lus10025529 pacid=23145004 polypeptide=Lus10025529 locus=Lus10025529.g ID=Lus10025529.BGIv1.0 annot-version=v1.0
MNALTQISVAHPSFSQSSLPSSPTFSLPFPSSSSPSNFKPRNSLLLFNNNVFSATKRRISRATRVVCSASDSPAKTLRSILDSPGVHQGPACFDALSAKL
VEKSGFLFCFTSGFSISAARLGLPDTGFISYGEMVDQGQQITQAVSIPVIGDGDNGYGNAMSVKRTVKGYINAGFAGIILEDQVSPKACGHTRGRKVVSR
EEAVMRIKAAVDARQESGSDIVIVARTDSRQAISLDEALWRSGAFAEAGADVLFIDALGSREEMRAFCDVSPQVPKMANMLEGGGKTPILNPLELEEIGY
KLVAYPLSLIGVSIQAMQDALTAIKGGRIPPPGSMPSFEEIKETLGFNAYYEEEKRYATSSNSVSRQPASSNVYSVQRRDQDDKEQRSESPQEPVVEVIT
PDVYNAYGADGSRGPFSGIWSRTLRVKITGNDGFEKLDVRIPAGFLDGITNIVPALGGVNIKELLDEAAGEAGGKLLLDFKDTVGDRIQVFLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43180 Phosphoenolpyruvate carboxylas... Lus10025529
[exp]
0 1
AT3G12350 F-box family protein (.1.2) Lus10010606
[exp]
5.6 0.7576
AT3G54810 GATA GATA8, BME3, BM... GATA TRANSCRIPTION FACTOR 8, B... Lus10037994
[exp]
5.7 0.8183
AT1G27200 Domain of unknown function (DU... Lus10030815
[exp]
6.2 0.8416
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Lus10032435
[exp]
6.3 0.8077
AT3G54810 GATA GATA8, BME3, BM... GATA TRANSCRIPTION FACTOR 8, B... Lus10009227
[exp]
7.9 0.7985
AT1G05170 Galactosyltransferase family p... Lus10021538
[exp]
9.2 0.8112
AT3G59110 Protein kinase superfamily pro... Lus10001423
[exp]
10.2 0.8225
AT5G08200 peptidoglycan-binding LysM dom... Lus10040979
[exp]
13.0 0.7913
AT5G55190 RAN3, ATRAN3 RAN GTPase 3 (.1) Lus10043297
[exp]
16.5 0.7968
AT1G27200 Domain of unknown function (DU... Lus10010731
[exp]
17.0 0.7539

Lus10025529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.