Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59340 429 / 1e-150 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59310 419 / 1e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59320 376 / 7e-130 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 251 / 5e-82 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026744 [exp] 595 / 0 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10004060 [exp] 287 / 5e-95 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10003247 [exp] 219 / 2e-68 AT3G59310 256 / 1e-83 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10002279 [exp] 96 / 2e-22 AT3G59330 111 / 2e-28 Eukaryotic protein of unknown function (DUF914) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151800 [exp] 493 / 4e-175 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.002G230600 [exp] 482 / 6e-171 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.003G030800 [exp] 260 / 2e-84 AT3G59310 265 / 7e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF06027 [flax] [poplar] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Lus10025530 pacid=23144950 polypeptide=Lus10025530 locus=Lus10025530.g ID=Lus10025530.BGIv1.0 annot-version=v1.0 ATGTTAAACTTCAACGAGTTCTGCACCACGAAAACGTTGGTGGGTCTTGGATTGGGCCAATTCCTCTCCCTGCTCATAACTTCTACTGGTTTCTTATCAT CCGAGCTCGCCAGAAAAGGGATCAATGCTCCAACTTCACAATCCTTTTTAAATTATGTATTATTGGCTGTTGTTTACGGGGGCGTTATGCTATATAGGAA ACAAAAACTTAAGGCTAAATGGTACTACTATTTGATTCTTGGAGTGATCGACGTGGAGGCCAATTTTCTTGTGGTGAAGGCCTATCAGTACACCTCTCTC ACGAGTGTAATGTTGCTGGATTGTTGGGCGATTCCGTGCGTGATGCTTCTTACCTGGTTGTTTCTCAAGACAAAGTATAGATTCAAGAAGATATCTGGAG TTATAGTTTGTGTGGCTGGTCTTATTCTTATTGTTTTTTCAGACGTTCATGCTGCTGATAGATCATCAGTAGGAGCTTATCCTTCAATGCTCTCTTTTCC TGGCTTATCAGAAGAAACCGGCAATGCCATTTATTCCAAGACTGATCTTGAATTGGGTTCAATAGATCACTTTTTCGAAGCTACTATAATGTATCCTTCT CTTGCAGGAGGAAGCAAGCCTTGGTTAGGAGATGTTCTAGTCGTTGCTGGGGCAACTCTGTATGCAGTCAGTAACGTCAGTGAGGAGTTTCTCGTCAAGA GTGCTGACAGAGTTGAACTCATGGCCCTGCTGGGGTTTTTCGGCGCCATTATCAGTGCTATCCAAATAGCTATTTTGGAGCGTAGCGAGCTTAGATCAAT TCACTGGTCAGCTGGAGCAGCTCTTCCATTTGTTGGCTTTTCTTTGGCGATGTTTCTGTTCTACTCTCTGGTCCCTATTCTGCTTAAGATTAACGGGTCT ACAATGCTCAACCTGTCATTACTATCGTCGGACATGTGGGCTGTCTTGATTCGCATTTTTGCATACCATCAGAAGGTTGATTGGATGTACTTCCTCGCAT TTGGTGCCGTAGCTGTTGGTTTGGTCATCTACTCAAGAGGCGAGAAAGACGAAGACGAATCTGGAGACGAGGGAGACGGAAATGCAGAGAGAAGCAAACG AGATGAGGAAGCTGGGTTGGCAGGTCACAGTAGAGGAACAGTTGCAGGAAGTAGCTCAAAACAATGA
AA sequence Show only first row Show all	>Lus10025530 pacid=23144950 polypeptide=Lus10025530 locus=Lus10025530.g ID=Lus10025530.BGIv1.0 annot-version=v1.0 MLNFNEFCTTKTLVGLGLGQFLSLLITSTGFLSSELARKGINAPTSQSFLNYVLLAVVYGGVMLYRKQKLKAKWYYYLILGVIDVEANFLVVKAYQYTSL TSVMLLDCWAIPCVMLLTWLFLKTKYRFKKISGVIVCVAGLILIVFSDVHAADRSSVGAYPSMLSFPGLSEETGNAIYSKTDLELGSIDHFFEATIMYPS LAGGSKPWLGDVLVVAGATLYAVSNVSEEFLVKSADRVELMALLGFFGAIISAIQIAILERSELRSIHWSAGAALPFVGFSLAMFLFYSLVPILLKINGS TMLNLSLLSSDMWAVLIRIFAYHQKVDWMYFLAFGAVAVGLVIYSRGEKDEDESGDEGDGNAERSKRDEEAGLAGHSRGTVAGSSSKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59310			Eukaryotic protein of unknown ...		Lus10025530 [exp]	0	1
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	1.0	0.9846
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	3.0	0.9483
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	3.5	0.9684
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	6.0	0.9600
AT1G76250			unknown protein		Lus10012274 [exp]	9.2	0.9594
AT3G25290			Auxin-responsive family protei...		Lus10025878 [exp]	9.8	0.9462
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	10.2	0.9604
					Lus10016571 [exp]	10.2	0.9498
AT1G05060			unknown protein		Lus10030021 [exp]	15.2	0.9504
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10019377 [exp]	16.9	0.9373

Compare expression of checked genes

Lus10025530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.