Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19640 335 / 1e-111 MRS2-3, MGT4 magnesium transporter 4 (.1) AT1G16010 220 / 2e-67 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 213 / 7e-65 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT5G09690 167 / 1e-48 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G58970 169 / 3e-48 MRS2-4, MGT6 magnesium transporter 6 (.1) AT2G03620 168 / 5e-48 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G64560 162 / 3e-46 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09720 142 / 3e-39 Magnesium transporter CorA-like family protein (.1) AT4G28580 118 / 2e-29 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09710 77 / 1e-15 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026745 [exp] 387 / 4e-134 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10026746 [exp] 280 / 2e-94 AT3G19640 170 / 3e-51 magnesium transporter 4 (.1) Lus10026063 [exp] 227 / 4e-70 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 225 / 3e-69 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10036901 [exp] 181 / 1e-53 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2) Lus10022218 [exp] 186 / 5e-53 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10024860 [exp] 179 / 5e-52 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10008803 [exp] 166 / 3e-47 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10021887 [exp] 164 / 1e-46 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G086300 [exp] 367 / 2e-124 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098200 [exp] 260 / 3e-83 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.001G291866 [exp] 236 / 1e-76 AT3G19640 167 / 3e-49 magnesium transporter 4 (.1) Potri.007G098000 [exp] 242 / 5e-76 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.001G043200 [exp] 220 / 2e-67 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 217 / 3e-66 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G291600 [exp] 184 / 2e-57 AT3G19640 145 / 4e-42 magnesium transporter 4 (.1) Potri.010G077900 [exp] 186 / 5e-55 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.008G161400 [exp] 168 / 5e-48 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.006G081700 [exp] 142 / 6e-38 AT3G58970 538 / 0.0 magnesium transporter 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025531 pacid=23145052 polypeptide=Lus10025531 locus=Lus10025531.g ID=Lus10025531.BGIv1.0 annot-version=v1.0 ATGAGGCCTAATCTGACTCCACTGTCCAAACCCAATGACGTTGACACAGACCCACTGAGCCGGCCAGCCACTACCCTCATTACTGCCCGCAAGAAAGGCA CCGGAGTTCGGGCATGGCTCCTGCTGGATTCAACCGGTCAGACGCAGGTGGTGGAGGCTGGGAAGCATGCCATCATGCGCCGAACAGGGTTACCTGCCCG TGACCTTCGAATCCTTGACCCCCTTCTGTCATACCCTTCCACTGTATTGGGTCGTGAGCGGGCGATTGTCATCAATCTAGAGCATATCAAGGCGATCATA ACCGCCCAGGAGGTTCTGTTACTGAATTCCAAGGACCCTTCTGTCACTCCCTTTGTTGAAGAGCTGCAAAAGAGGATTTCTTTCCATTACCAAGCTACCA AGGCACAGGACGGCAATGGTGAAGATATAAATTTGAAGACTATGCAAGATTCACAAGGGCCAAAATCAAGTACTGGTAGTCCTGAAAATTTTCCTGATCA TTCATTACTTGCTCAAGATCATGAAGAAGGGAGGATGGGAGATGGGAGGCAGAGCATGGAGAATCGTGATGGATCGAAGGTTCTCCCGTTTGAGTTTGTA GCTTTAGAAGCATGCTTGGAAGCTGCATGTGGCTGCTTAGAAATTGAAGCCAAAACTTTGGAGCAAGAAGCGCACCCTGCATTGGATAAGCTGACTTCAA AAATCAGTACTCTCAACTTAGAACGTGTCCGGCAGATTAAGAGTCGGTTAGTGGCAATTACTGGTCGAGTGCAAAAGGTTAGGGATGAACTCGAGCACTT ACTTGATGACGACGAGGACATGGCTGAAATGTACCTGACAGAAAAGTTAGCCAGCATGGAAAACTCGACTGCTTCTTCTTTCAGCGATGGAGATGAAATG GAAGATGGTCTGCCACCTGCGATGGACGACAAATTGAACTCATGTTTCACCAGCCCGAATGCTGAAGCCTCTAGGGAAGGTCATGATGCTTCCACCAGCT ACGATCCAGATATTCAAACAGCTGATCATACAAACGATCATCCTTACAGTGCACATGGTGCACTTAGCCGCACACTCACTAGTACCACTAGGAGTGCTGT AAGCAAGCACCTTGATGTCGAGGAGCTAGAAATGCTTCTCGAAGCATACTTCGTGCAGATTGACGGAACGCTTAACAAACTGTCCACGGTATAG
AA sequence Show only first row Show all	>Lus10025531 pacid=23145052 polypeptide=Lus10025531 locus=Lus10025531.g ID=Lus10025531.BGIv1.0 annot-version=v1.0 MRPNLTPLSKPNDVDTDPLSRPATTLITARKKGTGVRAWLLLDSTGQTQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAII TAQEVLLLNSKDPSVTPFVEELQKRISFHYQATKAQDGNGEDINLKTMQDSQGPKSSTGSPENFPDHSLLAQDHEEGRMGDGRQSMENRDGSKVLPFEFV ALEACLEAACGCLEIEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLASMENSTASSFSDGDEM EDGLPPAMDDKLNSCFTSPNAEASREGHDASTSYDPDIQTADHTNDHPYSAHGALSRTLTSTTRSAVSKHLDVEELEMLLEAYFVQIDGTLNKLSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10025531 [exp]	0	1
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	1.7	0.9141
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	5.2	0.8908
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	6.3	0.8621
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	6.8	0.9012
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	9.8	0.8511
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	12.2	0.8844
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	12.5	0.8693
AT1G79090			unknown protein		Lus10031210 [exp]	12.8	0.8575
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	13.5	0.8374
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	16.7	0.8420

Compare expression of checked genes

Lus10025531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.