Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06710 113 / 4e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20740 57 / 1e-09 EMB3131 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22670 45 / 2e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02060 42 / 0.0001 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 42 / 0.0001 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 42 / 0.0001 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14080 41 / 0.0004 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06400 40 / 0.0006 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 40 / 0.0006 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G30290 40 / 0.001 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026747 [exp] 344 / 6e-112 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016361 [exp] 56 / 4e-09 AT4G20740 914 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019764 [exp] 56 / 5e-09 AT4G20740 590 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018567 [exp] 48 / 2e-06 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021991 [exp] 47 / 6e-06 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 46 / 9e-06 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019141 [exp] 44 / 5e-05 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009626 [exp] 43 / 0.0001 AT1G71210 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 43 / 0.0001 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123600 [exp] 169 / 1e-48 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G203100 [exp] 63 / 2e-11 AT4G20740 964 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G084800 [exp] 49 / 5e-07 AT3G48250 715 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 48 / 1e-06 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G154901 [exp] 46 / 6e-06 AT5G47360 429 / 4e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G053600 [exp] 44 / 5e-05 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G103400 [exp] 43 / 9e-05 AT1G03560 911 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G098600 [exp] 42 / 0.0001 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G090600 [exp] 40 / 0.0006 AT5G08310 851 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025532 pacid=23144970 polypeptide=Lus10025532 locus=Lus10025532.g ID=Lus10025532.BGIv1.0 annot-version=v1.0 ATGAGAAGGTGGGTTGCTAAGACTCTTCTTCAATCGCGTTCCCTTCCATTTCCAATCAGTCACTCGAAAACCAGGTTGCTCACAAGTTCTTCCTCCGACA ATCTGGAAGGTTTGGTTGACCCGGATGACCTTTCTCTCTCAGGGCCAGAGTCAATTTCCAGTGAAGAGTTTACTCTTCTGCGGGATTCTTTATTGAACCC TCATTCTTCTTCTTCTTCTTCTTCTTCTGCTGGTAAGTTCTCAGATGAAGCGTTGATGGTTGTTGATGTGATCTTGAGTGTTAATGATCAGTTTGGTAAA GAAACCGTGAAGTTGCTCAGGCGGCATAGGGAGAAGTTAAGCGAGTCTTTGGTGATTGAGGTTCTGAATTTGCTCAATAGCCCTGAACTAGGTCTTAGAT TCTTCATATGGGCTGGCCAGCAAATCGGATATTCCCACACTTTACCTGTGTACAATGCGCTACTAGAGTTGTTGCAGAGAAATAATAGTGCTGCTGGAGG TAGAATACCAGAGCAGTTCCTGCTGCAAATCGAAGGTGGTAAGGTAGAATACCGGAGCAGCTCCTGCTGCAAATCGAAGGTGGTGATGACAAGGAAGTTC TAG
AA sequence Show only first row Show all	>Lus10025532 pacid=23144970 polypeptide=Lus10025532 locus=Lus10025532.g ID=Lus10025532.BGIv1.0 annot-version=v1.0 MRRWVAKTLLQSRSLPFPISHSKTRLLTSSSSDNLEGLVDPDDLSLSGPESISSEEFTLLRDSLLNPHSSSSSSSSAGKFSDEALMVVDVILSVNDQFGK ETVKLLRRHREKLSESLVIEVLNLLNSPELGLRFFIWAGQQIGYSHTLPVYNALLELLQRNNSAAGGRIPEQFLLQIEGGKVEYRSSSCCKSKVVMTRKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025532 [exp]	0	1
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	9.7	0.8838
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	12.5	0.8658
AT1G27590			unknown protein		Lus10007229 [exp]	17.1	0.8777
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	19.1	0.8818
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	23.5	0.8731
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	28.4	0.8774
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	32.4	0.8714
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	36.5	0.8765
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10012535 [exp]	36.7	0.8608
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	37.1	0.8620

Compare expression of checked genes

Lus10025532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.