Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06710 966 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 279 / 2e-83 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 280 / 1e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 273 / 3e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 270 / 7e-80 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63080 265 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 264 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 265 / 3e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 263 / 4e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 263 / 2e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026747 [exp] 1405 / 0 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 293 / 6e-87 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 283 / 2e-82 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 278 / 4e-82 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 278 / 9e-81 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 277 / 3e-80 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 272 / 2e-79 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010410 [exp] 270 / 1e-77 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 268 / 4e-77 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123600 [exp] 1137 / 0 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 307 / 2e-93 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 302 / 2e-91 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 306 / 6e-90 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 292 / 2e-88 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 290 / 7e-88 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 284 / 1e-85 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 284 / 2e-85 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 280 / 4e-84 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 278 / 3e-83 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025533 pacid=23145132 polypeptide=Lus10025533 locus=Lus10025533.g ID=Lus10025533.BGIv1.0 annot-version=v1.0 ATGTCAGGTTTAGGGTATGCAATGGATGGTTTTACTTTGGGATGTTTTGCTTGTTCTCTTTGTAAAGCTGGGAAATGGAGAGAAGCATTGAAGTTAATTG AGGATGAGGAATTCAAACCTGATACTGTGCTTTTTACCAACATGATATCCGGATTGTGTGAAGCCTCGCTCTTTGACGTAGCTATGGATTTCTTAACAAG AATGCGAGTTTATTCTTGTATTCCTAATGTTCTGACTTATAGGATTTTGCTCTGTGGGTGTTTGAGAAAGAAACAGCTTGGTAGATGTAAAAGAATTTTG AATATGATGATTACAGAAGGATGCTACCCAAGTCCAGCCATTTTTAACTCTTTAGTTAATGCTTATTGCAAATTGAGGGATTATGCTTACGCTTATAAAC TTATTAAGAAAATGATGGAATGTGGGTGCCAGCCGGGTTACATAGTCTACAACATATTTATTGGTGGTGTTTGTGGAAATCAGGAGTTGCCTGAGGCGAG TGCCCTTGAATTGGCTGAAAAAGCATATCGGGAAATGCTCGATGCGGGAGTCACATTGAATAAGGTCAACGTTAGCAACCTTGCATGGTGTCTTTGTGGT GCTGGAAAATTCGAGGAGGCATATTGTCTCATTAGTGAAATGATGAGCAAGGGCTTTATACCAGATACCAGTACATATTCCCAGGTCATTACTTGTCTCT GTAATTCGACCAAAGTAGAAAAGGCCTTTCTATTATTTCAAGAAATGAGGAAGAATGGAATTCTGCCAGATGTGTACACATATACGCAATTGATCGACAG TTTTTGTAAGGTAGGTTTACTAAAACAGGCTCGCAGGTGGTTTGATGAAATGGAGGAAAATGGATGTGCCCCTAATGTAGTGACTTACACAGCACTTATA CATGCTTACCTTAAAGCAAGGAAGGTGTCCGATGCAAACGAAATTTTCGAGCTGATGTTGTCCAAGGGCTCAGTTCCTAATGTCGTTACATATACAGCAC TGATCGATGGATATTGTAAAGCCAGAGAGATTGAGAAGGCTTGCAAAATATATGCAAGAATGAAACAGGAAAATGTTGAAAATTCAGAAGTAGATATGTA TTTTGGGGTGGTTGATACAGAGTCCGAGGAACCAAATCATTTTACGTATGGAGCTTTGGTTGACGGCTTATGCAAAGCTCATAAGGTGAAAGAGGCACAT GAGTTATTAGAAGCAATGTCGGCAAGTGGTTGTCAGCCGAATCATATCATATATGATGCCCTTTTAGATGGATGTTGCAAGGTCGGTAAGCTAGATGAGG CGCAAGAGGTGTTTACTCAGATGATAGAGCATGGCTACAATCCGAATGTATATTCATACAGCTCTTTGATAGACAGGTTGTTCAAAGATAAGCGATTAGA TCTCGCCTTGAAAGTGCTGTCCAAAATGCTTGAGAATTCTTGTGCTCCTAATGTTGTTATCTACACTGAAATGATTGACGGTCTATGCAAAGTTGGAAAG ACTGATGAAGCATATAAACTTATGGTTATGATGGAAGAAAAGAAGTGTCATCCGAATGTTGTGACGTATACTGCAATGATTGATGGCTTTGGGAAAGCTG GAAGACTTGATAAATGCCTTCAGCTTTTTCAAAAGATGGCTTCCAAGGGCTGTGCTCCGAATTTCGTCACTTATAAGGTTCTGATAAACCATTGTTGTGC AGCTAGCCTGTTGGACGAGGCTCTTAAACTCTTGGAAGAGATGAAAGAGACACACTGGCCAAAGCATGTAGCAGGTTATCGTAAAGTCATTGAAGGGTTC AATAGAGAATTTATTGCTTCTCTGGATCTGTTGGATGAGTTTAGTGAAAAGGAAGCAGTACCAGTTTCCCCTATTTACAGAGTTCTGATCGATAGTTTTG CTAAGGCCGGAAGACTAGAGAAAGCTTTAGAACTGTACAAAGAAGTCTCATCATTCTTAGCACCATCAGCAGCTAACCGGAATATGTATATTTCTTTAAT AGAGGGCCTTGCACTTGCTAATAGGGTTGATATGGCTTTTGATTTGCATGTTGATATGACTTTAAAAGGCATCATTCCTGAGGTTGGCACCGTCGTTCAC CTGATCAAAGGTCTTTTGAGATTAAACAGGTGGGATCAAATACTGCAGCTTTCAGATGGGATATGCCAGGCGCATATACCCTCAAAGTTTACGAAGCAAC ACGCATTTATGAGAGATGTGAAGGCAGTGAAGCTGGAGGTTGGGGACAAGGTTTGGTCGGTAAGGATCTGTCTTGGACCTGACAATATGTCTGTCAAGAT TGCCGCTGGCTGGAGTAGGTTCGTGAAAAAAAACTCGCTCAAACTCAGAGATGTTTGTGTGTTCAAGCTGATGGAAAAATCCCCTGAGGTCCGAATGAAG GTCACCATCATTAGAGGTGTCTGA
AA sequence Show only first row Show all	>Lus10025533 pacid=23145132 polypeptide=Lus10025533 locus=Lus10025533.g ID=Lus10025533.BGIv1.0 annot-version=v1.0 MSGLGYAMDGFTLGCFACSLCKAGKWREALKLIEDEEFKPDTVLFTNMISGLCEASLFDVAMDFLTRMRVYSCIPNVLTYRILLCGCLRKKQLGRCKRIL NMMITEGCYPSPAIFNSLVNAYCKLRDYAYAYKLIKKMMECGCQPGYIVYNIFIGGVCGNQELPEASALELAEKAYREMLDAGVTLNKVNVSNLAWCLCG AGKFEEAYCLISEMMSKGFIPDTSTYSQVITCLCNSTKVEKAFLLFQEMRKNGILPDVYTYTQLIDSFCKVGLLKQARRWFDEMEENGCAPNVVTYTALI HAYLKARKVSDANEIFELMLSKGSVPNVVTYTALIDGYCKAREIEKACKIYARMKQENVENSEVDMYFGVVDTESEEPNHFTYGALVDGLCKAHKVKEAH ELLEAMSASGCQPNHIIYDALLDGCCKVGKLDEAQEVFTQMIEHGYNPNVYSYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGK TDEAYKLMVMMEEKKCHPNVVTYTAMIDGFGKAGRLDKCLQLFQKMASKGCAPNFVTYKVLINHCCAASLLDEALKLLEEMKETHWPKHVAGYRKVIEGF NREFIASLDLLDEFSEKEAVPVSPIYRVLIDSFAKAGRLEKALELYKEVSSFLAPSAANRNMYISLIEGLALANRVDMAFDLHVDMTLKGIIPEVGTVVH LIKGLLRLNRWDQILQLSDGICQAHIPSKFTKQHAFMRDVKAVKLEVGDKVWSVRICLGPDNMSVKIAAGWSRFVKKNSLKLRDVCVFKLMEKSPEVRMK VTIIRGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025533 [exp]	0	1
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	10.7	0.6877
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10011867 [exp]	11.2	0.6943
AT2G34930			disease resistance family prot...		Lus10016338 [exp]	11.2	0.6265
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	18.2	0.6930
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	35.7	0.6718
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	55.5	0.6500
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	95.7	0.5893
AT2G39580			unknown protein		Lus10029459 [exp]	132.3	0.5874
AT1G22460			O-fucosyltransferase family pr...		Lus10020943 [exp]	179.1	0.5583
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	219.0	0.5585

Compare expression of checked genes

Lus10025533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.