Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 83 / 2e-18 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 81 / 2e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 78 / 2e-17 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 76 / 1e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G16210 47 / 4e-06 B3 Transcriptional factor B3 family protein (.1.2) AT4G31690 47 / 9e-06 B3 REM9 Transcriptional factor B3 family protein (.1) AT5G66980 44 / 5e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G35310 41 / 0.0005 B3 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025507 [exp] 288 / 4e-98 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 174 / 3e-55 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 152 / 3e-44 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 150 / 1e-43 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026720 [exp] 141 / 3e-43 AT3G18990 45 / 1e-06 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026724 [exp] 122 / 1e-33 AT4G33280 42 / 2e-04 AP2/B3-like transcriptional factor family protein (.1) Lus10026719 [exp] 103 / 6e-28 ND 35 / 0.004 Lus10016777 [exp] 108 / 1e-27 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 95 / 4e-23 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 94 / 4e-22 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 94 / 5e-22 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 83 / 4e-18 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 81 / 4e-17 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 72 / 2e-14 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 63 / 2e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 61 / 1e-10 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 57 / 2e-09 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 56 / 1e-08 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 45 / 3e-05 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025534 pacid=23145066 polypeptide=Lus10025534 locus=Lus10025534.g ID=Lus10025534.BGIv1.0 annot-version=v1.0 ATGGCTGCATCTTCAAGCCAGGCTAGGCGTGGAGAGGAAGTAATCCGTTTCATCAAGATCATCTTTGAATCTACCATCCTTGACAAGAAGCTGAAGATAC CTAGCAAATTTATCAGTGAGTTTGGACAGCAGCTGGTTGGATGTGCTGCTGCTACTTTAGAGGCTCCCAGTGGAGACAAATGGGAAGTTGGTTTGGAGAA GGATAGGCAAGGGTTTGTTTGGTTCTGCAACGATGGATGGGAGAGATTCGCAAAGTTCTACACTTTGGAGCATGGCCACTTCTTGCTTTTCGGGTACAGA GGCCGCACTGATTTCTCAGTAGTTATATGCGACATCTATGCTGCTGAGATTCCCTACCCGACATTGAGCTTCCCTGCTCGTGTTGAAATCGAACATGAGG AGGAGGACTCCCTTCCTATTTCTCTGGAGAGCTTAAGTGTTGATGCTGCTGCTGCAAATGAGAAAGCCAAATCTCCTATGGTTGATGATTCTGCAGGCTC GTATGATGCTTCTGAAGATCCTTCCGGATCGGAACTTTCCTCGTTCAAGATCAGAATCCCACCAAGTTATCTGAATGCTAGACAGCGAGTAGAGGTGAAG CTGATGGTAGGGAACAAGGTTTGGCCAGTAAGGGCCGGTCTCGGACGTGGCATTTCTGTCAAGCTGGCATCTGGCTGTATTGGGTTCGCGAAAGAAAACT CCCTGGAAGTCGAAGATGTTTGTGTTCGAGCTGATCGCAACATCCCCTGA
AA sequence Show only first row Show all	>Lus10025534 pacid=23145066 polypeptide=Lus10025534 locus=Lus10025534.g ID=Lus10025534.BGIv1.0 annot-version=v1.0 MAASSSQARRGEEVIRFIKIIFESTILDKKLKIPSKFISEFGQQLVGCAAATLEAPSGDKWEVGLEKDRQGFVWFCNDGWERFAKFYTLEHGHFLLFGYR GRTDFSVVICDIYAAEIPYPTLSFPARVEIEHEEEDSLPISLESLSVDAAAANEKAKSPMVDDSAGSYDASEDPSGSELSSFKIRIPPSYLNARQRVEVK LMVGNKVWPVRAGLGRGISVKLASGCIGFAKENSLEVEDVCVRADRNIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025534 [exp]	0	1
AT2G41750			DTW domain-containing protein ...		Lus10012192 [exp]	15.4	0.8445
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024295 [exp]	30.8	0.8244
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10021728 [exp]	40.9	0.8263
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	47.1	0.8197
AT2G37670			Transducin/WD40 repeat-like su...		Lus10003974 [exp]	51.2	0.7850
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10030953 [exp]	52.1	0.8232
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035972 [exp]	57.3	0.8226
AT5G19830			Peptidyl-tRNA hydrolase family...		Lus10014589 [exp]	62.8	0.8121
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020034 [exp]	64.7	0.8075
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10040529 [exp]	75.1	0.8178

Compare expression of checked genes

Lus10025534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.