Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032535 [exp] 160 / 7e-51 ND / Lus10033028 [exp] 135 / 8e-40 ND / Lus10021744 [exp] 113 / 2e-32 ND / Lus10010609 [exp] 87 / 2e-21 ND / Lus10003221 [exp] 80 / 1e-19 ND / Lus10012492 [exp] 69 / 1e-14 ND / Lus10039431 [exp] 64 / 3e-13 ND / Lus10012674 [exp] 57 / 3e-11 ND / Lus10030123 [exp] 41 / 8e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03108 [flax] [poplar] DBD_Tnp_Mut MuDR family transposase
Representative CDS sequence Show only first row Show all	>Lus10025539 pacid=23144988 polypeptide=Lus10025539 locus=Lus10025539.g ID=Lus10025539.BGIv1.0 annot-version=v1.0 ATGATTGTGGACCAATATGAGGGTGGTCTTAAAATTCCAAATTTTGACCCCACTCGTAAAGATTTCTACATCGGTCAACGGTTTTACACAAAGAAGGAGG CAAGTCTTGCTGTCAAACACTGGGTCGTGCAGAACAATCGAGCTTTGGCGACCTCACGCACAAAGACTTGGGAGTTTGAGGTCAGGTGTTATTCGTACAA AACCAACAATTGTCCATGGAGGTTACGCGTCTCGACCAGAGCGGATGACGGGTTCTGGACGGTTCGGCAGTGGAATCCACATCACACATGTGACGGAAGG ACGGGTTCTGGACCGCTACACGGTCATTTGATAATAATCGTTGGATCAACACCTATAGTGCGTCATGCGTTCTATGATGCACCGCGCACTGTAGGTGTAA CGTTTCTACTTGATTGTATAAGTAATTTTTTATTAAATCCCGTCTAA
AA sequence Show only first row Show all	>Lus10025539 pacid=23144988 polypeptide=Lus10025539 locus=Lus10025539.g ID=Lus10025539.BGIv1.0 annot-version=v1.0 MIVDQYEGGLKIPNFDPTRKDFYIGQRFYTKKEASLAVKHWVVQNNRALATSRTKTWEFEVRCYSYKTNNCPWRLRVSTRADDGFWTVRQWNPHHTCDGR TGSGPLHGHLIIIVGSTPIVRHAFYDAPRTVGVTFLLDCISNFLLNPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025539 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	4.5	0.6781
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	6.3	0.6781
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	7.7	0.6781
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	8.9	0.6781
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	10.0	0.6781
					Lus10033149 [exp]	18.5	0.6492
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	19.9	0.6164
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	20.0	0.6492
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	21.4	0.6492
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	22.6	0.6492

Compare expression of checked genes

Lus10025539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.